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Published on: September 20, 2018
Extracting Signs and Symptoms of Hypertensive Disorders in Pregnancy from Clinical Notes Using Natural Language
Jihye Kim Scroggins1, Zhihong Zhang2, Ismael I Hulchafo3
1School of Nursing, University of North Carolina at Chapel Hill, 120 Medical Dr, Chapel Hill, NC, 27514, USA. jihyeks@unc.edu.
Purpose:
Hypertensive disorders in pregnancy (HDP) affect 16% of births in the United States. In this pilot study, we conducted a preliminary evaluation of natural language processing (NLP) in extracting signs and symptoms (SS) of HDP from clinical notes within electronic health records (EHRs).
Methods:
This retrospective observational pilot study used EHR data from patients admitted for labor and birth (N = 83,003 clinical notes from 17,775 patients). Four SS categories were extracted: elevated blood pressure, neurological, renal, and hepatic/hematologic. Five machine learning models and ClinicalBERT were trained and tested using five-fold cross-validation. The best-performing model was applied to the full dataset. Bivariate analyses were performed to examine (1) differences in HDP diagnoses based on ICD-10 codes (gestational hypertension, preeclampsia, and eclampsia) by SS documentation and (2) differences in SS documentation by patient race and ethnicity.
Results:
XGBoost demonstrated the highest macro-average F1-score (0.75). Elevated blood pressure showed the highest F1-score (0.87), followed by neurological SS (0.77). In the full dataset, 24.3% of clinical notes and 42.3% of patients had documentation of at least one SS category. A higher proportion of HDP diagnoses was observed with an increased number of SS categories documented (p < .001). A higher proportion of non-Hispanic Black patients had documentation of SS across all categories.
Conclusion:
NLP can extract SS with moderate accuracy, supporting feasibility for larger-scale extraction. Findings also highlight differences in SS documentation by patient race and ethnicity. Future research is needed to improve NLP performance, including expanding annotated data.
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