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Updated: May 22, 2026

A Pipeline to Characterize Structural Heart Defects in the Fetal Mouse
Published on: December 16, 2022
Fetal Mouse Heart Clearing, Imaging, and 3D Reconstruction
Hamna Ammar1, Paul Delgado-Olguín2,3,4
1Translational Medicine, The Hospital for Sick Children, Peter Gilgan Centre for Research and Learning, Toronto, ON, Canada.
Abstract:
Traditional histological sectioning has been widely used to examine congenital heart defects (CHDs) in mouse models, providing detailed insights into tissue and cellular architecture. However, this approach is time-consuming, labor-intensive, and can miss subtle defects due to the critical need for precise serial sections. In contrast, three-dimensional imaging of cleared embryonic hearts using light sheet fluorescence microscopy offers a more efficient and comprehensive solution. This technique enables the rapid acquisition of z-stacks, including thousands of sections, without manual sectioning, which can be reconstructed into high-resolution 3D models. As a result, it significantly improves the detection and visualization of CHDs in mouse fetuses.

