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Related Concept Videos

Molecular Factors Affecting Cell Division01:27

Molecular Factors Affecting Cell Division

Several external and internal factors influence the initiation and inhibition of cell division. For instance, the death of nearby cells or the release of human growth hormone (hGH) promotes cell division. In contrast, lack of hGH or crowding of cells can inhibit cell division.
Several proteins function as internal regulators to ensure each cell cycle stage is completed faithfully before proceeding to the next. Regulator molecules may act directly or influence the activity or production of other...
Cells Coordinate Growth and Proliferation02:36

Cells Coordinate Growth and Proliferation

Cell size is a significant factor impacting cellular design, function, and fitness. There exists some internal coordination by which cells double their masses before division, thus, achieving homeostasis. Coordination between cell growth and proliferation depends on the checkpoints in between cell cycle phases. Loss of coordination or failure in the checkpoint mechanism can drive the cell to uncontrolled growth and loss of cellular function. Like dividing cells that coordinate cellular growth,...
Cellular Differentiation00:57

Cellular Differentiation

How does a complex organism such as a human develop from a single cell? It all starts from a single fertilized egg which gives rise to a vast array of cell types, such as nerve cells, muscle cells, and epithelial cells that characterize the adult? Throughout development and adulthood, cellular differentiation leads cells to assume their final morphology and physiology. Differentiation is the process by which unspecialized cells become specialized to carry out distinct functions.
A zygote is a...
Determining the Plane of Cell Division02:13

Determining the Plane of Cell Division

Positioning the cell division plane is a critical step during development and cell differentiation, particularly during mitosis when the plane is essential for determining the size of the two daughter cells. The cell division plane is perpendicular to the plane of chromosome segregation, but different types of organisms have different cell division mechanisms to suit their morphology and function. 
Animal cells
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Non-equilibrium in the Cell01:16

Non-equilibrium in the Cell

An important concept in studying metabolism and energy is that of chemical equilibrium. Most chemical reactions are reversible. They can proceed in both directions, releasing energy into their environment in one direction, and absorbing it from the environment in the other direction. The same is true for the chemical reactions involved in cell metabolism, such as the breaking down and building up of proteins into and from individual amino acids, respectively. Reactants within a closed system...
Calmodulin-dependent Signaling01:16

Calmodulin-dependent Signaling

Calmodulin (CaM) is a calcium-binding protein in eukaryotes that controls various calcium-regulated cellular processes. It has four calcium-binding sites that bind calcium to form the calcium-calmodulin ( Ca2+-CaM) complex. GPCR stimulation increases the calcium levels in the cells that bind to CaM and induces a conformational change.
The Ca2+-CaM complex does not have enzymatic activity by itself. Instead, the complex binds downstream target proteins, including membrane proteins or enzymes,...

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Updated: May 23, 2026

Finite Element Modelling of a Cellular Electric Microenvironment
08:23

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Published on: May 18, 2021

Computational modelling of cell identity.

Woo Jun Shim1, Chris Siu Yeung Chow1, Shaine Chenxin Bao1

  • 1Institute for Molecular Bioscience, The University of Queensland, Brisbane, Australia.

The Biochemical Journal
|May 22, 2026
PubMed
Summary

Computational models predict cell identity, overcoming experimental limitations in profiling molecular diversity. This review guides biologists in selecting appropriate computational methods for cell type classification and discovery.

Keywords:
bioinformaticscell identitycomputational modelsgene expression and regulationmachine learning

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Area of Science:

  • Genomics
  • Computational Biology
  • Bioinformatics

Background:

  • Experimental cell profiling captures limited molecular diversity.
  • Computational modeling predicts cell states beyond experimental reach.
  • Consortium data advances genomic feature learning for cell identity.

Purpose of the Study:

  • To review computational methods for cell identity inference.
  • To provide a practical guide for biologists.
  • To outline method rationales, applications, and limitations.

Main Methods:

  • Examined 43 computational methods.
  • Included methods using genomic regulatory elements, marker genes, and reference atlases.
  • Covered traditional machine learning and transformer-based approaches.

Main Results:

  • Identified diverse computational strategies for cell identity inference.
  • Highlighted the role of genomic features in model generalizability.
  • Assessed biological rationales, applications, and limitations.

Conclusions:

  • Computational models are essential for comprehensive cell identity analysis.
  • Understanding method specifics aids in choosing the right tools.
  • This review empowers biologists with informed method selection for cell state research.