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Updated: May 24, 2026

HOX Loci Focused CRISPR/sgRNA Library Screening Identifying Critical CTCF Boundaries
Published on: March 31, 2019
In situ mutational screening and CRISPR interference define apterous cis-regulatory inputs during compartment
Gustavo Aguilar1, Michèle E Sickmann1, Dimitri Bieli1
1Growth and Development, Biozentrum, Spitalstrasse 41, University of Basel, Basel, Switzerland.
This study reveals how the early wing enhancer (apE) controls tissue development in Drosophila. Disrupting apE leads to wing duplications and wingless phenotypes, highlighting its crucial role in setting up developmental boundaries.
Area of Science:
- Developmental Biology
- Genetics
- Molecular Biology
Background:
- Tissue axes establishment is crucial for embryonic development.
- In Drosophila, anterior/posterior (AP) and dorsal/ventral (DV) boundaries define wing coordinates.
- Selector genes engrailed (en) and apterous (ap) establish these boundaries, with ap expression initiated during early wing development.
Purpose of the Study:
- Investigate the transcriptional inputs of the early apterous enhancer (apE).
- Determine the role of apE in correctly establishing the DV boundary relative to the AP boundary.
- Clarify the mechanism of apE misregulation and its impact on AP axis defects.
Main Methods:
- CRISPR/Cas9 for detailed mutational analyses of apE.
- dCas9 expression for tissue-specific enhancer disruption.
- Base-pair-resolution analyses to identify functional elements within apE.
Main Results:
- Mutations in apE caused mirror-image anterior wing duplications, indicating a role in DV/AP boundary positioning.
- Disruption of apE function revealed spatiotemporal requirements for its activity.
- A single HOX-binding site in apE was essential for wing development; its mutation resulted in wingless phenotypes.
- Transcription factors Pointed (Pnt), Homothorax (Hth), Grain (Grn), and HOX gene Antennapedia (Antp) were identified as critical for early apE function.
Conclusions:
- This study provides a molecular basis for early apterous activation and the consequences of its misregulation.
- The findings elucidate how compartmental boundaries are established during Drosophila wing development.
- apE plays a critical role in integrating positional information to ensure proper wing patterning.
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