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Using Large Language Models to Automate the Comparison and Integration of Evolving Clinical Practice Guidelines into

Chaïma Abdellaoui1, Akram Redjdal2, Brigitte Seroussi1,3

  • 1Sorbonne Université, INSERM, Université Sorbonne Paris Nord, LIMICS, Paris, France.

Studies in Health Technology and Informatics
|May 23, 2026
PubMed
Summary

Large Language Models (LLMs) show potential for updating clinical decision support systems (CDSSs) by comparing breast cancer guidelines. However, current LLMs face limitations, indicating a need for structured guideline formats for reliable CDSS integration.

Keywords:
Breast cancerClinical decision support systemsClinical practice guidelinesLarge Language ModelsPrompt Engineering

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Area of Science:

  • Medical Informatics
  • Artificial Intelligence in Healthcare
  • Clinical Practice Guidelines

Background:

  • Clinical decision support systems (CDSSs) enhance adherence to clinical practice guidelines (CPGs).
  • Rapid updates in CPGs pose challenges for maintaining CDSS knowledge bases.
  • Automating CPG comparison is crucial for efficient CDSS maintenance.

Purpose of the Study:

  • To investigate the use of Large Language Models (LLMs) for automating the comparison of breast cancer CPGs over time.
  • To identify guideline-derived recommendations and update the DESIREE CDSS knowledge base.
  • To assess the performance of LLMs in detecting inconsistencies between guideline versions.

Main Methods:

  • Comparison of two breast cancer CPGs: AP-HP (2016) and SENORIF (2021-2022).
  • Utilized fine-tuned Large Language Models (LLMs), including Mistral Large, for automated recommendation extraction and comparison.
  • Evaluated LLM performance using F1 score to measure accuracy in identifying guideline-derived recommendations.

Main Results:

  • The top-performing LLM (fine-tuned Mistral Large) achieved an average F1 score of 0.49.
  • Numerous inconsistencies were identified between the compared breast cancer CPG versions.
  • LLM performance indicates potential but also highlights significant limitations in current capabilities.

Conclusions:

  • Fine-tuned LLMs offer promising potential for automating the maintenance of CDSS knowledge bases.
  • Significant limitations exist in current LLM performance for CPG comparison and recommendation extraction.
  • Structured CPG formats are essential for ensuring reliable integration and updating of CDSSs.