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Published on: December 30, 2016
Cryo-EM structures of multiple-peptide resistance factor (MprF) from Pseudomonas aeruginosa
Shaileshanand Jha1, Kutti R Vinothkumar1
1National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India.
Abstract:
Aminoacylation of the lipid head group in many bacteria is carried out by bi-functional enzymes called MprF, which encode a soluble synthase domain that typically transfers lysine or alanine from a tRNA to lipid head groups. The modified lipid is subsequently translocated across the leaflets by a transmembrane domain. This modification of lipids probably evolved to adapt to the environment where the microbes reside. Here, we describe the cryo-EM structures of MprF enzyme from Pseudomonas aeruginosa, revealing a dimeric enzyme with a distinct architecture when compared with the homologous Rhizobium enzymes, and validate this arrangement with biochemical analyses. The cryo-EM maps and the models in detergent micelle and nanodisc reveal a conformational change of the terminal helix of the synthase domain, highlighting the dynamic elements in the enzyme that might facilitate catalysis. Several lipid-like densities are observed in the cryo-EM maps, which might indicate the path taken by the lipids, coupling the function of the two domains. The structures allow postulation of the binding modes of tRNA and lipid transport, and suggest that the mobile secondary structural elements in the synthase domain might play a mechanistic role in these functions.
Insights
Pseudomonas aeruginosa MprF enzymes, crucial for bacterial lipid modification, possess a unique dimeric structure revealed by cryo-EM. This structure highlights dynamic elements potentially involved in catalysis and lipid transport.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- MprF enzymes are bifunctional, catalyzing aminoacylation of lipid head groups and translocating modified lipids across bacterial membranes.
- Lipid modification by MprF is likely an adaptation to specific microbial environments.
- Understanding MprF structure-function is key to bacterial membrane biology.
Purpose of the Study:
- To determine the cryo-electron microscopy (cryo-EM) structures of the MprF enzyme from Pseudomonas aeruginosa.
- To elucidate the enzyme's architecture, conformational dynamics, and potential mechanisms of catalysis and lipid transport.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was used to obtain high-resolution structures of MprF in detergent micelle and nanodisc environments.
- Biochemical analyses were performed to validate the observed dimeric arrangement and structural features.
Main Results:
- The cryo-EM structures reveal a dimeric MprF enzyme with an architecture distinct from homologous Rhizobium MprF.
- Conformational changes in the synthase domain's terminal helix were observed, suggesting dynamic elements crucial for catalysis.
- Lipid-like densities indicate potential pathways for lipid transport between the synthase and transmembrane domains.
Conclusions:
- The dimeric structure of Pseudomonas aeruginosa MprF is validated, offering insights into its unique architecture.
- Dynamic structural elements within the synthase domain are proposed to play a mechanistic role in tRNA binding and lipid transport.
- The findings provide a structural basis for understanding the bifunctional mechanism of MprF enzymes.
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