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Updated: May 26, 2026

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
Computational exploration of Aegle marmelos coumarins: DFT, molecular docking, and dynamics studies for
Jan Alam1, Muhammad Ali Versiani1, Nadeem Ahmed2
1Department of Chemistry, Federal Urdu University of Arts, Science and Technology, Karachi, Pakistan.
Abstract:
Literature reviews indicate that Aegle marmelos exhibits significant anti-hypertensive activity. Therefore, the present study is focused on the isolation and identification of bioactive compounds responsible for this effect. Purification of the methanolic extract led to the isolation of marmelosin (1), xanthotoxol (2), and xanthotoxin (3). Spectroscopic analyses such as UV, FT-IR, EIMS, and 1H-NMR were used to elucidate the structures of the compounds. Furthermore, computational studies were conducted to evaluate their anti-hypertensive potential, physicochemical profile, and drug-likeness. These included molecular docking, DFT, FMO, MESP, ADME, and molecular dynamics (MD) simulation of compound 1 against the Angiotensin II type 1 receptor (AT1R) to assess its binding affinity and complex stability.
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