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Related Concept Videos

pV-Diagrams01:18

pV-Diagrams

The pV diagram, which is a graph of pressure versus volume of the gas under study, is helpful in describing certain aspects of the substance. When the substance behaves like an ideal gas, the ideal gas equation describes the relationship between its pressure and volume. On a pV diagram, it is common to plot an isotherm, which is a curve showing p as a function of V with the number of molecules and the temperature fixed. Then, for an ideal gas, the product of the pressure of the gas and its...
Structure of Conjugated Dienes01:16

Structure of Conjugated Dienes

Introduction
Conjugated dienes are compounds characterized by the presence of alternating double and single bonds. In a conjugated system like 1,3-butadiene, the unhybridized 2p orbital on each carbon overlaps continuously, allowing the π electrons to be delocalized across the entire molecule. In contrast, this type of overlap does not occur in cumulated and isolated dienes, such as 2,3-pentadiene and 1,4-pentadiene, respectively. Instead, the π electrons remain localized between the double...

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Updated: May 26, 2026

Automated Sholl Analysis of Digitized Neuronal Morphology at Multiple Scales
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IndentAtlas: an open-source toolbox for indentation mapping analysis.

Andre E Vellwock1, Shahrouz Amini1, Chiara Micheletti1,2

  • 1Department of Biomaterials, Max Planck Institute of Colloids and Interfaces, Potsdam Science Park, Am Mühlenberg 1, 14476 Potsdam, Germany.

Methodsx
|May 25, 2026
PubMed
Summary
This summary is machine-generated.

IndentAtlas is an open-source toolbox simplifying micro- and nanoindentation data analysis. It integrates visualization and analysis, improving understanding and correlation of mechanical properties with sample images.

Keywords:
Data analysisData cleaningData curationIndentation mappingMechanical characterizationNanoindentationSoftwareVisualization

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Area of Science:

  • Materials Science
  • Mechanical Engineering
  • Biophysics

Background:

  • Micro- and nanoindentation are crucial for material property characterization.
  • Current analysis methods are labor-intensive, relying on user input for data cleaning and visualization.
  • Proprietary software often limits correlation between mechanical data and sample images.

Purpose of the Study:

  • To introduce IndentAtlas, an open-source toolbox for micro- and nanoindentation data analysis.
  • To provide a unified platform for understanding, cleaning, analyzing, and visualizing indentation results.
  • To enable accurate correlation of spatially resolved mechanical properties with sample images.

Main Methods:

  • Development of an open-source software toolbox, IndentAtlas.
  • Integration of data analysis and visualization steps into a single platform.
  • Implementation of a function for overlaying optical images with mechanical property maps.

Main Results:

  • IndentAtlas offers a comprehensive environment for post-mapping indentation data analysis.
  • The toolbox facilitates better understanding and cleaning of measurement results.
  • Spatially resolved mechanical properties (reduced modulus, hardness) can be accurately overlaid with sample images.

Conclusions:

  • IndentAtlas streamlines micro- and nanoindentation data analysis, enhancing interpretation.
  • The open-source nature promotes accessibility and collaboration within the research community.
  • Improved visualization and correlation capabilities advance the characterization of material properties.