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Updated: May 28, 2026

A Microfluidic Platform for High-throughput Single-cell Isolation and Culture
Published on: June 16, 2016
An integrated optofluidic platform enabling label-free single-cell sorting and culture
Baojian Zhang1,2,3, Fuyuan Chen2,4,3, Liru Zhao1,2
1School of Ophthalmology & Optometry, Eye Hospital, Wenzhou Medical University, Wenzhou 325027, P.R. China. beili@ciomp.ac.cn.
Abstract:
Optical tweezers (OT) technology enables high-precision single-cell manipulation but is fundamentally constrained by the trade-off between hydrodynamic drag and trapping stability; overcoming fluidic forces often requires elevated laser power that compromises cell viability. Here, we present an integrated optical tweezers and microwell array (MA-chip) (OTMA) platform that decouples optical trapping from fluidic transport via a Z-axis "lift-and-drift" retrieval strategy. By using microwells as hydrodynamic shelters, the platform enables deterministic single-cell sorting and automated collection into standard 96-well plates for subsequent culture while minimizing shear-induced perturbations. The system exhibits robust performance for targets ≥3 µm, demonstrating broad applicability from microorganisms to large mammalian tumor cells. Furthermore, it achieves deterministic sorting with near-complete recovery at a throughput of 20-30 cells per min, requiring <1 s of laser exposure per cell. Importantly, the platform exhibits excellent biocompatibility, maintaining >90% viability in fragile mammalian cells and achieving a clonal expansion rate of 93.8% in yeast. By shifting the design priority from maximal throughput to functional cell quality, OTMA shows strong potential as a robust, label-free tool for applications requiring high-fidelity cellular states, such as rare-cell cloning and stress-sensitive single-cell omics.

