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Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Rapid MALDI-TOF Mass Spectrometry Identification of the Chalkbrood Pathogen Ascosphaera apis
Barbara Hočevar1, Darja Kušar2, Igor Gruntar2
1Institute of Pathology, Forensic Veterinary Medicine, Wildlife, Bees and Aquaculture, Veterinary Faculty, University of Ljubljana, Gerbičeva 60, 1000 Ljubljana, Slovenia.
Abstract:
Ascosphaera apis is a fungal pathogen of honeybee larvae and the primary cause of chalkbrood disease, which weakens bee colonies, impairing their ability to function effectively and making them more susceptible to other pathogens and environmental stressors. This study aimed to develop and validate an in-house matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) spectral library for A. apis. A new MALDI-TOF MS library was constructed using reference Ascosphaera species and validated through whole-genome-based confirmation of 31 clinical isolates of A. apis. Three different protein extraction methods were tested and compared: liquid cultivation, formic acid-ethanol extraction and extended direct transfer. Our findings demonstrate that MALDI-TOF MS is a rapid and reliable tool for identifying A. apis under the tested laboratory conditions and within the analyzed strain set, with no misidentifications observed for the liquid cultivation and formic acid-ethanol extraction methods. The extended direct mycelium transfer method was slightly less effective but still showed a high sensitivity of 83.9%. This study provides a foundation for improving diagnostic approaches in the management of honeybee fungal diseases.
Insights
Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) offers a rapid and reliable method for identifying Ascosphaera apis, the fungus causing chalkbrood disease in honeybees.
Area of Science:
- Mycology
- Apiculture
- Analytical Chemistry
Background:
- Ascosphaera apis causes chalkbrood disease, weakening honeybee colonies and increasing susceptibility to other stressors.
- Effective management of chalkbrood disease relies on accurate and timely identification of A. apis.
Purpose of the Study:
- To develop and validate an in-house matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) spectral library for A. apis.
- To assess the efficacy of different protein extraction methods for A. apis identification using MALDI-TOF MS.
Main Methods:
- Construction of a MALDI-TOF MS spectral library using reference Ascosphaera species.
- Validation using whole-genome sequencing of 31 clinical A. apis isolates.
- Comparison of three protein extraction methods: liquid cultivation, formic acid-ethanol extraction, and extended direct transfer.
Main Results:
- MALDI-TOF MS proved to be a rapid and reliable tool for identifying A. apis within the tested strain set.
- Liquid cultivation and formic acid-ethanol extraction methods showed no misidentifications.
- Extended direct mycelium transfer method demonstrated high sensitivity (83.9%) but was slightly less effective.
Conclusions:
- MALDI-TOF MS, particularly with liquid cultivation or formic acid-ethanol extraction, provides an effective method for A. apis identification.
- This study lays the groundwork for improved diagnostic strategies in managing honeybee fungal diseases like chalkbrood.
- Accurate identification of A. apis is crucial for effective disease management and maintaining honeybee colony health.
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