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NINJ1 hypomethylation enhances endothelial dysfunction in brain arteriovenous malformations
Chun-Jui Chen1,2,3,4, Hongfei Zhang1,2,3,4, Tonglin Pan1,2,3,4
1Department of Neurosurgery, Huashan Hospital, Fudan University, Shanghai 200040, China.
Brain : a Journal of Neurology
|May 26, 2026
Summary
Epigenetic changes in brain arteriovenous malformations (bAVMs) activate NINJ1, a gene promoting endothelial dysfunction and vascular fragility. This discovery sheds light on bAVM pathogenesis and hemorrhage risk in young individuals.
Area of Science:
- Vascular Biology
- Epigenetics
- Neuroscience
Background:
- Brain arteriovenous malformations (bAVMs) cause intracranial hemorrhage in young patients.
- The molecular basis of bAVM endothelial dysfunction and vascular fragility is not fully understood.
- While KRAS-MAPK pathway activation is implicated, the role of epigenetic dysregulation is unclear.
Purpose of the Study:
- To investigate the genome-wide DNA methylation landscape in bAVM tissues.
- To identify novel epigenetic contributors to bAVM pathogenesis.
- To elucidate the functional role of NINJ1 in endothelial dysfunction and vascular integrity.
Main Methods:
- Genome-wide DNA methylation profiling (Illumina MethylationEPIC v2 array).
- Targeted pyrosequencing and immunofluorescence validation.
- Functional studies in human brain microvascular endothelial cells and zebrafish models.
Main Results:
- Distinct epigenetic landscape in bAVM tissue with enriched genes in angiogenesis and signaling.
- Nerve Injury-Induced Protein 1 (NINJ1) identified as hypomethylated and upregulated in bAVMs.
- NINJ1 overexpression enhanced endothelial proliferation, migration, and tube formation, while knockdown reversed these effects.
- NINJ1 enhanced KRAS-MAPK/ERK signaling, increased endothelial permeability, and impaired vascular integrity in vivo.
Conclusions:
- Promoter hypomethylation and NINJ1 activation are novel epigenetic contributors to bAVM endothelial dysfunction.
- NINJ1 acts as an upstream enhancer of KRAS-MAPK signaling, promoting vascular instability.
- Epigenetic dysregulation of NINJ1 may increase hemorrhage risk in bAVMs.

