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Updated: May 28, 2026

Simultaneous Laryngopharyngeal and Conventional Esophageal pH Monitoring
Published on: December 14, 2020
Rethinking Long-Term PPI Therapy in GERD: A Narrative Review from a Microbial Ecology Perspective Beyond Acid
Andrea Zanoni1, Sonia Facchin2, Valentina Mari1
1Unit of General Surgery, Rovereto Hospital Azienda Sanitaria Universitaria Integrata of Trento (ASUIT), 38068 Rovereto, Italy.
Gastroesophageal reflux disease (GERD) involves more than just stomach acid. Proton pump inhibitors (PPIs) alter the esophageal microbiome, potentially impacting GERD treatment and requiring new microbiota-targeted therapies.
Area of Science:
- Gastroenterology and Microbiology
- Investigating the complex interplay between host, microbes, and disease.
- Focusing on esophageal microbial ecology and its role in gastrointestinal disorders.
Background:
- Gastroesophageal reflux disease (GERD) is traditionally viewed through an acid-centric model.
- Proton pump inhibitors (PPIs) are primary GERD treatments, but many patients remain symptomatic.
- GERD is increasingly recognized as multifactorial, involving reflux barrier, mucosal defense, immune responses, and microbiota.
Purpose of the Study:
- To review current evidence on acid suppression, esophageal microbial ecology, and host-microbe interactions in GERD.
- To explore the potential of microbiota-targeted therapeutic strategies for GERD.
- To provide an integrated overview of these complex relationships.
Main Methods:
- Conducted a narrative literature review using electronic databases (PubMed, Scopus).
- Prioritized recent and clinically relevant studies without formal time restrictions.
- Qualitatively synthesized evidence to provide an integrated overview.
Main Results:
- The esophagus harbors a microbial ecosystem influencing mucosal homeostasis.
- GERD and Barrett's esophagus show shifts toward pro-inflammatory Gram-negative anaerobic bacteria.
- Long-term PPI use alters gut microbiota, increasing certain taxa and reducing beneficial bacteria, potentially linked to dysbiosis.
Conclusions:
- GERD is a multifactorial condition where acid suppression impacts esophageal microbial ecology.
- Alterations in the gut microbiome due to PPIs may influence GERD pathogenesis and treatment outcomes.
- Understanding these interactions can lead to integrated, personalized therapeutic strategies targeting the microbiota.
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