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Updated: May 29, 2026

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Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Circulating Tumor DNA Methylation Level Is a More Accurate Prognostic Biomarker in Colon Cancer.
Yuta Murai1, Kiichi Sugimoto2, Takahiro Irie1
1Department of Coloproctological Surgery, Juntendo University Faculty of Medicine, Tokyo, Japan.
Anticancer Research
|May 27, 2026
Summary
Methylation levels of the SOX11 gene in circulating tumor DNA (ctDNA) offer a more accurate prognosis for sigmoid and rectosigmoid colon cancer recurrence-free survival (RFS) than lymph node size. This ctDNA biomarker aids in predicting RFS for these patients.
Area of Science:
- Oncology
- Molecular Diagnostics
- Cancer Genomics
Background:
- Accurate preoperative staging is crucial for predicting prognosis and guiding treatment in sigmoid and rectosigmoid (RS) colon cancer.
- Current radiological staging based on metastatic lymph node (LN) size has limitations in pStage II/III disease.
Purpose of the Study:
- To evaluate the prognostic impact of preoperative staging using metastatic LN size in pStage II/III sigmoid and RS colon cancer.
- To investigate the correlation between metastatic LN size and SOX11 gene methylation levels in circulating tumor DNA (ctDNA).
Main Methods:
- Retrospective analysis of 353 patients with sigmoid and RS colon cancer.
- Classification of patients into accurately staged (Group E) and understaged (Group U) groups based on preoperative vs. postoperative diagnosis.
- Quantitative assessment of SOX11 gene methylation in ctDNA using methylation-specific polymerase chain reaction.
Main Results:
- pT3N+ patients with understaged preoperative diagnosis (Group U) showed significant differences in recurrence-free survival (RFS) compared to accurately staged patients (Group E).
- Lower SOX11 gene methylation levels (Relative Methylation Values - RMVs) were observed in patients with smaller LN short diameters (<4 mm).
- Patients with smaller LNs (≤4 mm) exhibited lower ctDNA methylation levels and longer RFS.
Conclusions:
- SOX11 gene methylation in ctDNA serves as a more accurate prognostic biomarker for RFS than LN size-based radiological staging in pStage II/III sigmoid and RS colon cancer.
- The extent of SOX11 gene methylation in ctDNA can reliably predict RFS, improving prognostication for these patients.

