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Updated: May 31, 2026

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
Published on: August 14, 2018
The phylogenetic origin of turtles.
Xavier A Jenkins1, Brandon R Peecook2, Jonah N Choiniere3
1American Museum of Natural History, New York, NY 10026, USA; Idaho Museum of Natural History, Idaho State University, Pocatello, ID 83201, USA; Department of Biological Sciences, Idaho State University, Pocatello, ID 83201, USA; Evolutionary Studies Institute, University of the Witwatersrand, Johannesburg, Wits 2050, South Africa.
The evolutionary origins of turtles are clarified: Eunotosaurus africanus is not an early turtle but a distinct reptile. This finding supports turtles being closely related to archosaurs, resolving evolutionary debates.
Area of Science:
- Paleontology
- Evolutionary Biology
- Comparative Anatomy
Background:
- The evolutionary origins of turtles are debated, with conflicting hypotheses from molecular and morphological data.
- Eunotosaurus africanus, a Permian reptile, has been considered the oldest stem turtle, crucial for understanding turtle anatomy evolution.
Purpose of the Study:
- To evaluate phylogenetic hypotheses of turtle origins using anatomical data.
- To reassess the relationship of Eunotosaurus africanus to turtles and other reptiles.
Main Methods:
- Analysis of anatomical observations from X-ray computed microtomography (μCT) scans.
- Comprehensive phylogenetic analysis of Eunotosaurus and candidate stem turtles.
Main Results:
- Eunotosaurus africanus lacks key reptile features and is identified as a millerettid, not a stem turtle.
- Shared traits between Eunotosaurus and turtles, like broadened ribs, evolved convergently due to similar ecological pressures (fossoriality).
- Phylogenetic analysis strongly supports turtles as sister to Archosauria, aligning morphological and molecular data.
Conclusions:
- Eunotosaurus is reclassified, revising our understanding of early turtle evolution.
- Turtle origins are placed among early archosauromorphs, providing insights into the evolution of the turtle body plan.
- Convergent evolution explains similarities between Eunotosaurus and turtles, not shared ancestry.
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