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Intercalation Favors DNA Covalent Photobinding in Photoresponsive Dual PDT/PCT Bimetallic Assemblies
Abdelazim M A Abdelgawwad1, Daniel Roca-Sanjuán1, Marta E Alberto2
1Institut de Ciència Molecular, Universitat de València, P.O. Box 22085, València 46071, Spain.
Abstract:
The local treatment of solid tumors through photoactivated therapies demands the development of alternative strategies independent of oxygen levels, which are often very low in cancerous tissues. In this regard, the combination of an efficient reactive oxygen species (ROS) photogenerator with a drug that covalently targets DNA represents a valuable approach due to the in situ combination of type I/II photodynamic reactions with the covalent blockage of the DNA biological function. In this context, the theoretical framework of the chemical events that cause the observed phototoxicity is far from being fully understood, especially the dynamic factors, timescales, and environmental effects. This work sheds light on the molecular basis of these events by studying the DNA photoreactivity of a Ru(II)/Os(II) and a Pt(II) bimetallic assembly via microsecond molecular dynamics and multiscale biased quantum mechanics/molecular mechanics (QM/MM) MD simulations. Analysis of the DNA interaction modes reveals persistent major/minor groove interactions of the photosensitizer and a thermodynamically favored DNA intercalation. On the other hand, the free energy landscapes reveal kinetically fast (energy barriers ca. 6 kcal·mol-1) ligand exchange reactions between the N7 position of guanine and the platinum center in the triplet excited state, clearly highlighting the role of light in accelerating the chemical process. Additional analyses suggest that DNA intercalation, often associated with high cellular toxicity, could instead be seen as an opportunity to increase phototoxicity indexes by reducing the DNA conformational space available for photoreactions and improving absorption properties.
Insights
This study explores light-activated cancer therapies, combining photosensitizers with DNA-targeting drugs. Molecular dynamics simulations reveal light accelerates drug-DNA interactions, enhancing phototoxicity for improved cancer treatment strategies.
Area of Science:
- Photodynamic therapy
- Chemical biology
- Computational chemistry
Background:
- Oxygen-independent cancer therapies are needed due to low oxygen levels in tumors.
- Combining photosensitizers with DNA-targeting drugs offers a dual mechanism for cancer treatment.
- The molecular mechanisms underlying phototoxicity in these systems require further elucidation.
Purpose of the Study:
- To investigate the molecular basis of phototoxicity in bimetallic Ru(II)/Os(II) and Pt(II) assemblies targeting DNA.
- To understand the dynamic factors, timescales, and environmental effects influencing DNA photoreactivity.
- To explore the role of DNA interaction modes, such as intercalation, in enhancing phototoxicity.
Main Methods:
- Microsecond molecular dynamics simulations.
- Multiscale biased quantum mechanics/molecular mechanics (QM/MM) MD simulations.
- Analysis of DNA interaction modes and free energy landscapes.
Main Results:
- Photosensitizer exhibits persistent major/minor groove interactions with DNA.
- Thermodynamically favored DNA intercalation was observed.
- Light significantly accelerates ligand exchange reactions between guanine and the platinum center in the excited state (energy barriers ~6 kcal·mol⁻¹).
Conclusions:
- DNA intercalation can enhance phototoxicity by limiting DNA conformational flexibility and improving light absorption.
- The study provides molecular insights into the accelerated drug-DNA interactions under light activation.
- This work supports the development of oxygen-independent photodynamic therapies for solid tumors.
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