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Updated: May 31, 2026

Application of Membrane and Cell Wall Selective Fluorescent Dyes for Live-Cell Imaging of Filamentous Fungi
Published on: November 28, 2019
Caspofungin-Based Red-Emissive Probes for Fluorescent Imaging of Pathogenic Fungi
Maxime Klausen1, Richa Sharma2, Jason L Brown3
1Chimie ParisTech, PSL University, CNRS, Institute of Chemistry for Life and Health Sciences, Paris 75005, France.
Abstract:
Fungal infections are an often-neglected cause of morbidity worldwide, while their inaccurate and often inconclusive diagnosis indirectly promotes high morbidity and the development of antimicrobial resistance. Here, the clinically used semisynthetic echinocandin antifungal caspofungin was selectively conjugated to red-emitting fluorescent dyes to develop new optical imaging probes for fungal detection. The probes were characterized using established 2D NMR techniques to determine the specific position of the fluorophore on the peptide backbone, and both isomers demonstrated selective labeling of pathogenic fungal strains with similar efficacy. Selective multiplexed imaging of target species was achieved in a co-culture of fungi and bacteria, including when using benchtop imaging platforms.
Insights
New fluorescent probes were created by attaching dyes to the antifungal drug caspofungin. These probes enable accurate optical imaging for detecting fungal infections, even in mixed cultures.
Area of Science:
- Medical imaging
- Mycology
- Antimicrobial drug development
Background:
- Fungal infections cause significant global morbidity.
- Inaccurate diagnosis of fungal infections contributes to high morbidity and antimicrobial resistance.
- There is a need for improved diagnostic tools for fungal detection.
Purpose of the Study:
- To develop novel optical imaging probes for enhanced fungal detection.
- To utilize the antifungal caspofungin as a basis for these probes.
- To improve the accuracy and efficiency of diagnosing fungal infections.
Main Methods:
- Selective conjugation of caspofungin with red-emitting fluorescent dyes.
- Characterization of the resulting probes using 2D NMR spectroscopy.
- Testing probe efficacy in selective labeling of pathogenic fungal strains and multiplexed imaging in co-cultures.
Main Results:
- Successfully developed fluorescent probes based on caspofungin.
- Confirmed specific fluorophore attachment positions via 2D NMR.
- Demonstrated selective labeling of pathogenic fungi by both isomers with high efficacy.
- Achieved selective multiplexed imaging of fungi in fungal-bacterial co-cultures using benchtop platforms.
Conclusions:
- The developed caspofungin-based fluorescent probes are effective for optical imaging of fungal infections.
- These probes offer a promising tool for accurate and selective fungal detection.
- The technology is applicable even with basic imaging equipment, facilitating broader use.
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