Related Experiment Video
Updated: Jun 28, 2026

Human Pluripotent Stem Cell Based Developmental Toxicity Assays for Chemical Safety Screening and Systems Biology Data Generation
Published on: June 17, 2015
Employing network toxicology, molecular docking, machine learning, and single-cell analysis to analyze BPA
Jianyu Chen1, Lianquan Wu2, Haoqi Jin1
1Department of Urology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, China.
None:
This study investigates the molecular mechanisms underlying bisphenol A (BPA)-induced clear cell renal cell carcinoma (ccRCC). We integrated transcriptomic data from multiple GEO datasets and performed differential expression analysis and WGCNA to identify BPA-associated candidate genes. Enrichment analyses implicated pathways including cell adhesion, lipid metabolism, arachidonic acid signaling, and innate immune response. Using twelve machine learning algorithms, we identified four core genes (ITGB2, TBXAS1, LIPA, and CLEC7A), all upregulated in ccRCC. Molecular docking suggested stable BPA-protein interactions with favorable binding energies. Single-cell analysis showed predominant expression of these genes in monocytes and macrophages. LIPA was elevated in kidney cancer tissues and associated with clinical outcomes. In vitro experiments confirmed that BPA exposure promoted ccRCC cell progression by regulating core gene expression. This integrated approach offers new insights into the molecular mechanisms of BPA-induced ccRCC and identifies potential biomarkers for environmental risk assessment.
More Related Videos
11:38High Content Screening Analysis to Evaluate the Toxicological Effects of Harmful and Potentially Harmful Constituents (HPHC)
Published on: May 10, 2016
09:01A High-throughput Assay for the Prediction of Chemical Toxicity by Automated Phenotypic Profiling of Caenorhabditis elegans
Published on: March 14, 2019