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Updated: May 31, 2026

Cell-Based Drug Screening for Inhibitors of Autophagy Related 4B Cysteine Peptidase
Published on: June 30, 2023
Autophagy impairs the sensitivity of Ewing sarcoma cells to PARP inhibitors
Julia Clausen1,2, Daniela Kocher1,2,3, Hauke M Schadwinkel4,5,6
1Department of Paediatric and Adolescent Medicine, Jena University Hospital, Friedrich Schiller University Jena, Jena, Germany.
Purpose:
PARP inhibitors (PARPi) proved effective in Ewing sarcoma cells in preclinical studies. In clinical evaluation, however, the PARPi olaparib failed to elicit substantial responses, suggesting an unknown mechanism of resistance to PARPi in Ewing sarcoma. Since autophagy has been identified as a PARPi resistance mechanism in other tumours, this study aimed at exploring the impact of autophagy on PARPi effectiveness in Ewing sarcoma cells.
Methods:
Effects of the PARPi olaparib and veliparib were assessed by flow cytometry in the Ewing sarcoma cell lines WE-68 and SK-ES-1. Autophagy levels were determined using the autophagosome tracer dye Cyto-ID, and cytotoxic effects were determined by the analysis of cell death and loss of mitochondrial membrane potential. Cyto-ID was used to separate cell populations into subpopulations with low, medium and high autophagy by flow cytometric cell sorting.
Results:
Olaparib and veliparib induced autophagy and cell death in parallel in WE-68 and SK-ES-1 cells. Induction of autophagy and cell death occurred at the same concentrations of both PARPi in both cell lines. Analysis of cells sorted according to autophagy levels revealed a clear association between PARPi effectiveness and autophagy level. The subpopulation of Ewing sarcoma cells with high autophagy responded significantly less to PARPi with cell death than the subpopulation with low autophagy.
Conclusion:
This study demonstrates that autophagy affects the anticancer activity of PARPi in Ewing sarcoma cells.
Insights
Autophagy promotes resistance to PARP inhibitors (PARPi) in Ewing sarcoma. Targeting autophagy may enhance PARPi effectiveness against this cancer.
Area of Science:
- Oncology
- Cell Biology
Background:
- Poly (ADP-ribose) polymerase inhibitors (PARPi) show preclinical efficacy in Ewing sarcoma.
- Clinical trials with olaparib revealed limited responses, indicating resistance mechanisms.
- Autophagy is a known resistance mechanism in other cancers.
Purpose of the Study:
- Investigate the role of autophagy in PARPi resistance in Ewing sarcoma.
- Determine the impact of autophagy modulation on PARPi effectiveness.
Main Methods:
- Assessed PARPi (olaparib, veliparib) effects on Ewing sarcoma cell lines (WE-68, SK-ES-1) using flow cytometry.
- Measured autophagy levels with Cyto-ID and cytotoxic effects via cell death and mitochondrial membrane potential analysis.
- Separated cells into low, medium, and high autophagy subpopulations via cell sorting.
Main Results:
- PARPi induced both autophagy and cell death in Ewing sarcoma cells.
- Higher autophagy levels correlated with reduced PARPi-induced cell death.
- Cells with high autophagy were significantly less responsive to PARPi treatment.
Conclusions:
- Autophagy influences the anticancer activity of PARPi in Ewing sarcoma.
- Autophagy represents a resistance mechanism to PARPi in this cancer type.
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