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Unveiling CTGF and APOA1: key hub genes and therapeutic targets in dilated cardiomyopathy
Ran Wang1, Jinmeng Chen2, Jian Zhu3
1Department of Emergency Internal Medicine, The First Affiliated Hospital of Bengbu Medical University, Bengbu, 233000, China.
Insights
This study identifies CTGF and APOA1 as potential biomarkers for dilated cardiomyopathy (DCM) risk. These findings offer new directions for understanding DCM and developing diagnostic tools.
Area of Science:
- Genomics and Bioinformatics
- Cardiovascular Research
- Biomarker Discovery
Background:
- Dilated cardiomyopathy (DCM) is a significant cardiovascular disease affecting over 0.04% of the population.
- The primary genetic drivers of DCM remain largely unidentified, hindering effective diagnosis and treatment.
- Identifying key genes is crucial for understanding DCM pathogenesis and developing targeted therapies.
Purpose of the Study:
- To identify key genes associated with the risk of dilated cardiomyopathy (DCM).
- To explore potential diagnostic biomarkers for DCM.
- To investigate the underlying molecular pathways involved in DCM development.
Main Methods:
- Utilized integrated bioinformatics analysis on three public Gene Expression Omnibus (GEO) datasets (GSE120895, GSE53081, GSE42955).
- Applied Weighted Gene Co-expression Network Analysis (WGCNA) to identify modules strongly correlated with DCM risk.
- Constructed a protein-protein interaction (PPI) network and performed Gene Ontology (GO) and KEGG pathway analyses to identify hub genes and associated pathways.
Main Results:
- Identified 862 differentially expressed genes (DEGs) in DCM.
- WGCNA highlighted significant associations between DEGs in blue and turquoise modules and DCM risk.
- KEGG analysis revealed the RTK-RAS pathway's involvement in DCM risk. CTGF and APOA1 emerged as potential biomarkers with high predictive accuracy (AUCs 0.83 and 0.867, respectively), confirmed by Western blot.
Conclusions:
- CTGF and APOA1 are significantly correlated with DCM risk and show promise as potential diagnostic biomarkers.
- The study implicates the RTK-RAS pathway in DCM pathogenesis.
- These findings provide a foundation for future functional studies on DCM and biomarker development.
Background:
Dilated cardiomyopathy (DCM), a life-threatening cardiovascular disease, affects more than 0.04% of the general population. However, the key genes associated with DCM are still unknown.
Methods:
Three publicly available datasets (GSE120895, GSE53081, and GSE42955) were obtained from the Gene Expression Omnibus (GEO) database. Weighted correlation network analysis (WGCNA), gene ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed on these DEGs. A protein‒protein interaction (PPI) network was then constructed to select the hub genes.
Results:
862 differentially expressed genes (DEGs) were identified using an integrated bioinformatics approach. WGCNA indicated that DEGs in the blue and turquoise modules exhibited the strongest associations with DCM risk (blue module: r = 0.29, P = 2.5e-4; turquoise module: r = 0.25, P = 1.6e-3). KEGG pathway enrichment analysis of the hub genes revealed that the RTK-RAS pathway score was associated with DCM risk. Receiver operating characteristic (ROC) analysis revealed that the expression levels of CTGF and APOA1 may serve as sensitive and specific predictors of DCM risk (AUC of CTGF = 0.83, P = 0.002; AUC of APOA1 = 0.867, P = 0.001). Furthermore, the expression of CTGF and APOA1 was confirmed by Western blot.
Conclusions:
Our results revealed that CTGF and APOA1 are correlated with DCM risk and represent potential biomarkers worthy of further investigation. The identification of these hub genes and the implicated RTK-RAS pathway provides a hypothesis and a direction for future functional research on DCM.
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