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Amino Acid Biosynthetic Pathways01:29

Amino Acid Biosynthetic Pathways

Amino acid biosynthesis is essential for cell growth, protein synthesis, and metabolic regulation. Cells generate essential and non-essential amino acids from metabolic intermediates to sustain vital biological functions. These intermediates originate from key metabolic pathways: glycolysis, the tricarboxylic acid (TCA) cycle, and the pentose phosphate pathway. Important precursors include α-ketoglutarate, pyruvate, oxaloacetate, phosphoenolpyruvate, and erythrose-4-phosphate, which provide...
Amino acids03:42

Amino acids

Amino acids are the monomers that comprise proteins. Each amino acid has the same fundamental structure, which consists of a central carbon atom, or the alpha (α) carbon, bonded to an amino group (NH2), a carboxyl group (COOH), and to a hydrogen atom. Every amino acid also has another atom or group of atoms bonded to the central atom known as the R group. There are 20 common amino acids present in proteins, each with a different R group. Variation in the amino acid sequence is responsible for...
Amino Acid Catabolism01:18

Amino Acid Catabolism

Microorganisms rely on proteins as an essential carbon and energy source, particularly in environments with limited polysaccharides or lipids. However, proteins are too large to cross the plasma membrane unaided, necessitating enzymatic degradation. Microbes secrete extracellular proteases and peptidases that hydrolyze proteins into peptides, which can then be transported across the membrane. Once inside the cell, intracellular proteases degrade these peptides into free amino acids, which...
Proteins: From Genes to Degradation02:11

Proteins: From Genes to Degradation

Within a biological system, the DNA encodes the RNA, and the nucleotide sequence in the RNA further defines the amino acid sequence in the protein. This is referred to as “The Central Dogma of Molecular Biology” - a term coined by Francis Crick.  Central dogma is a firm principle in biology that defines the flow of genetic information within any life form. The two fundamental steps in central dogma are - transcription and translation.
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tRNA Activation

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Amyloid Fibrils03:03

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Amyloid fibrils are aggregates of misfolded proteins.  Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils. 
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Residue-specific Incorporation of Noncanonical Amino Acids into Model Proteins Using an Escherichia coli Cell-free Transcription-translation System
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Racemisation of Amino Acids: From Synthetic Challenge to Biological Significance.

Othman Al Musaimi1,2,3,4

  • 1School of Pharmacy, Newcastle University, Newcastle upon Tyne, UK.

Chembiochem : a European Journal of Chemical Biology
|May 31, 2026
PubMed
Summary

This review explores how amino acid racemisation is both a synthetic challenge and a biological process. While chemists aim to prevent unwanted stereochemical changes during synthesis, racemisation naturally occurs in living systems and may contribute to cellular ageing. The study shows that chiral imbalance and post-translational modifications accumulate over time, affecting protein function. The authors examine how racemisation happens under mild physiological conditions and discuss its applications in forensic age estimation. By comparing synthetic and biological contexts, the review highlights the importance of understanding racemisation mechanisms for both chemistry and biology. The findings suggest that racemisation is not just an obstacle to be avoided but a natural process with biological significance.

Keywords:
Alzheimer diseasecataractforensic scienceprotein ageingracemisationAmino acid stereochemistryProtein turnover mechanismsChiral balance in biologyForensic age estimation

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Genetic Incorporation of Biosynthesized L-dihydroxyphenylalanine (DOPA) and Its Application to Protein Conjugation

Published on: August 24, 2018

Area of Science:

  • Organic chemistry reaction mechanisms
  • Protein biochemistry and turnover
  • Forensic age estimation techniques

Background:

Stereochemical purity has long been a critical concern in synthetic chemistry. Prior research has shown that racemisation is typically viewed as an unwanted byproduct requiring strict control. However, recent studies have revealed that this process occurs naturally in biological systems. Established knowledge includes the role of chiral amino acids in protein function and structure. That uncertainty drove investigations into whether racemisation might serve biological functions rather than merely being a synthetic challenge. No prior work had resolved how environmental and physiological conditions influence racemisation rates. This gap motivated exploration of both synthetic and biological contexts for racemisation. Understanding these dual perspectives could bridge gaps between chemical synthesis and biological function.

Purpose Of The Study:

This review aims to examine racemisation from both synthetic and biological angles. The specific problem addressed is the transition of racemisation from being seen as a synthetic obstacle to a biologically relevant process. The motivation stems from growing evidence that racemisation contributes to cellular ageing and protein turnover. The study seeks to clarify how and why this stereochemical conversion occurs in living systems. It also aims to identify factors that trigger racemisation under physiological conditions. The goal is to synthesise current knowledge about racemisation mechanisms and applications. By comparing synthetic and biological contexts, the authors hope to reveal new insights into protein dynamics. This work may help refine both synthetic protocols and biological interpretations of amino acid modifications.

Main Methods:

The authors conducted a comprehensive literature review focusing on stereochemical conversion mechanisms. They examined synthetic approaches to maintaining amino acid chirality. The study included analysis of biological processes where racemisation occurs naturally. Data sources ranged from chemical synthesis studies to biological function investigations. The review approach prioritised recent findings on racemisation in ageing and protein turnover. Particular attention was given to post-translational modifications and their chiral consequences. The authors evaluated how environmental and physiological factors influence racemisation rates. They also considered forensic and developmental applications of racemisation data.

Main Results:

Key findings indicate that racemisation occurs spontaneously under mild physiological conditions. The review shows that this process contributes to cellular ageing through chiral imbalance. Evidence suggests that post-translational modifications accumulate irreversibly with racemisation. The literature reveals that racemisation rates vary with environmental factors like temperature and pH. Findings show that even at body temperature, amino acids can undergo stereochemical conversion. The review highlights that racemisation is not limited to extreme synthetic conditions. Applications in forensic age estimation demonstrate practical utility of racemisation data. The study confirms that racemisation serves biological functions beyond being a synthetic challenge.

Conclusions:

The synthesis of evidence suggests that racemisation is both a synthetic challenge and a biological phenomenon. The authors propose that this stereochemical conversion plays roles in cellular processes like ageing. They suggest that understanding racemisation mechanisms could improve both synthetic and biological applications. The review indicates that mild physiological conditions are sufficient for racemisation to occur. The findings support the idea that chiral imbalance contributes to protein dysfunction over time. The authors highlight that racemisation data can be used in forensic age estimation techniques. They conclude that further study is needed to fully characterise racemisation's biological roles. The review proposes that both synthetic and biological perspectives should be considered in future research.

The authors propose that racemisation contributes to cellular ageing through chiral imbalance and irreversible post-translational modifications.

Findings show that racemisation happens even at body temperature without extreme pH or heat.

Maintaining chirality is essential for drug efficacy and protein function, as stereochemistry affects biological activity.

The study highlights racemisation as a tool for age estimation in forensic applications.

The review indicates that temperature, pH, and other conditions affect how quickly amino acids undergo stereochemical conversion.

The authors suggest that racemisation may disrupt normal protein function and contribute to cellular ageing.