AmygdalaGo-BOLT for boundary-aware segmentation of the human amygdala

Tracing the boundaries of the amygdala from brain images remains a major challenge in human neuroscience. Although large-scale neuroimaging studies increasingly collect thousands of scans to investigate structural development in children and adolescents, reliable segmentation of the amygdala is difficult due to its small size and complex morphology-particularly in pediatric populations. To address this, we developed AmygdalaGo-BOLT, a boundary-aware deep learning model specifically designed for amygdala segmentation. The model was trained and validated on 1,086 manually labeled pediatric MRI scans, with independent datasets used to assess generalizability. It integrates multiscale feature extraction, spatial priors, and self-attention mechanisms within a compact encoder-decoder architecture to enhance boundary detection. Across imaging centers and age groups, AmygdalaGo-BOLT demonstrates strong agreement with expert manual annotations, while substantially improving efficiency and accuracy relative to existing tools. This enables robust and scalable analysis of amygdala morphology in population neuroscience studies where manual tracing is impractical.