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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
MRPS22 variants alter mitochondrial ribosome assembly in patients with leukodystrophy, movement disorder and
Ruth I C Glasgow1,2, Finn Lennartsson3, Snjolaug Arnardottir4
1Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Solnavägen 9, 171 65, Stockholm, Sweden.
Abstract:
Mitochondrial diseases are clinically and genetically heterogeneous, often complicating diagnosis. Here, we describe four unrelated individuals with suspected mitochondrial disease who shared similar neuroimaging features, including bilateral symmetrical supra- and infratentorial white-matter abnormalities, together with variable movement disorders and intellectual impairment. Whole-genome sequencing identified the same homozygous MRPS22 variant (c.798_799delinsTA) in all four patients. MRPS22 encodes a component of the mitochondrial small ribosomal subunit (mtSSU). Functional studies in patient-derived fibroblasts showed impaired mitoribosome assembly and reduced de novo mitochondrial translation. Despite largely preserved steady-state levels of OXPHOS proteins, respiratory chain analysis identified a mild, isolated complex I deficiency. Proteomic profiling revealed reduced levels of mitochondrial ribosomal proteins and dysregulation of mitochondrial translation pathways. In line with the proteomic findings, RNA sequencing of fibroblasts from three patients revealed a distinct transcriptional signature compared with controls, with mitochondrial translation emerging as the most affected pathway. Mitochondrial-encoded transcripts were decreased, whereas nuclear-encoded mitochondrial genes were generally increased. Structural modelling suggested that the variant disrupts key interactions important for mitoribosome stability. While previously reported MRPS22 variants have been associated with severe, often prenatal-onset disease, the individuals described here exhibited a milder phenotype, thereby expanding the clinical spectrum of MRPS22-related disorders. Together, these findings support the pathogenicity of this variant and highlight the value of integrated genomic and functional analyses in diagnosing mitochondrial disease.
Insights
A novel homozygous MRPS22 gene variant causes a milder form of mitochondrial disease, affecting mitochondrial translation and ribosomal assembly. This finding expands the known clinical spectrum of MRPS22-related disorders.
Area of Science:
- Genetics
- Molecular Biology
- Neuroscience
Background:
- Mitochondrial diseases present diverse clinical and genetic features, making diagnosis challenging.
- Four unrelated patients with suspected mitochondrial disease showed similar neurological symptoms and brain imaging abnormalities.
Purpose of the Study:
- To identify the genetic cause of the observed mitochondrial disease phenotype.
- To investigate the functional consequences of the identified genetic variant.
Main Methods:
- Whole-genome sequencing to identify genetic variants.
- Functional studies using patient-derived fibroblasts (mitoribosome assembly, mitochondrial translation assays).
- Respiratory chain analysis, proteomic profiling, and RNA sequencing.
Main Results:
- A homozygous MRPS22 variant (c.798_799delinsTA) was identified in all four patients.
- The variant impaired mitoribosome assembly and de novo mitochondrial translation, leading to mild complex I deficiency.
- Proteomic and transcriptomic analyses revealed dysregulation of mitochondrial translation pathways.
Conclusions:
- The identified MRPS22 variant is pathogenic and expands the clinical spectrum of MRPS22-related mitochondrial disorders.
- Integrated genomic and functional analyses are crucial for diagnosing complex mitochondrial diseases.
- This study highlights a milder phenotype associated with this specific MRPS22 variant.
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