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Cells Engage Endogenous Malonate Synthesis to Drive Mitochondrial Metabolism
Riley J Wedan1,2,3, Pieter R Norden1, Morgan T Canfield1,2
1Department of Metabolism and Nutritional Programming, Van Andel Institute, Grand Rapids, MI.
Biorxiv : the Preprint Server for Biology
|June 4, 2026
Summary
Malonate supports mitochondrial fatty acid synthesis (mtFAS), but not via ACSF3. Acetyl-CoA carboxylase 1 (ACC1) synthesizes malonate from glucose, regulating mtFAS and oxidative function.
Area of Science:
- Biochemistry
- Cellular Metabolism
- Mitochondrial Function
Background:
- Malonate is an endogenous inhibitor of electron transport chain complex II.
- Its cellular source and metabolism are poorly understood, with Acyl-CoA Synthetase Family Member 3 (ACSF3) being the only known enzyme involved in its mitochondrial conversion.
- Previous studies on the link between ACSF3 and mitochondrial fatty acid synthesis (mtFAS) have shown conflicting results.
Purpose of the Study:
- To investigate the role of malonate in mtFAS.
- To clarify the metabolic pathway of malonate, particularly its relationship with ACSF3 and mtFAS.
- To identify the cellular source of malonate and its contribution to mitochondrial function.
Main Methods:
- Development of a novel mass spectrometry approach for stable isotope tracing into mtFAS products.
- Utilizing this method to trace malonate and other nutrients into mtFAS.
- Investigating the role of ACSF3 and ACC1 in malonate metabolism and mtFAS activity.
Main Results:
- Malonate serves as a carbon source for mtFAS, independent of ACSF3.
- Evidence of acetyl-CoA carboxylase 1 (ACC1)-dependent malonate synthesis from glucose was found.
- ACC1 is essential for optimal mtFAS activity and influences oxidative phosphorylation.
Conclusions:
- Malonate is a regulated endogenous intermediate supporting mtFAS activity.
- ACC1 plays a crucial role in malonate synthesis and subsequent mtFAS regulation.
- These findings highlight malonate's importance in mitochondrial oxidative function.
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