First-principles computation of electronic circular dichroism spectra of solvated molecules using RISM-SCF-cSED
Yuji Takabayashi1, Kosuke Imamura1, Daisuke Yokogawa2
1Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan.
Abstract:
We propose a practical first-principles protocol for computing electronic circular dichroism (ECD) spectra of chiral molecules in aqueous solution by combining time-dependent density functional theory (TDDFT) with the reference interaction site model self-consistent field with constrained spatial electron density (RISM-SCF-cSED), and, when necessary, molecular dynamics-based conformational sampling. After demonstrating the approach for D-lactic acid in water as a benchmark system with limited conformational variability, we apply a similar workflow to a solvated biomolecule, the terminally capped alanine tetramer (Ac-Ala4-NMe). One of the achievements of this study is that incorporating an explicit solute water hydrogen-bonding structure through RISM-SCF-cSED enables quantitative reproduction of the ECD spectrum of the rigid α-helical state. These results establish RISM-SCF-cSED/TDDFT combined as a general and computationally efficient platform for predicting ECD spectra of solvated molecules.
More Related Videos
Related Concept Videos
Raman Spectroscopy: Overview
However, a small fraction of the scattered light exhibits a frequency shift due to the exchange of energy between the incident photons and the...
Raman Spectroscopy Instrumentation: Overview
The monochromatic laser source, typically using visible or near-infrared radiation, generates a highly focused beam of light. This light interacts with the molecules of the sample, scattering some of the light. Liquid and gaseous samples are usually tested in ordinary glass capillaries, while solids can be analyzed as powders packed in capillaries or as potassium...
UV–Vis Spectroscopy: Molecular Electronic Transitions
IR Spectroscopy: Molecular Vibration Overview
Stretching vibrations are vibrational motions that occur along the bond line, changing the bond length or distance between two bonded atoms. They are further distinguished as symmetric or asymmetric. In symmetric stretching, the...
IR Spectroscopy: Hooke's Law Approximation of Molecular Vibration
According to Hooke's law, the vibrational frequency is directly proportional to the...
Chemical Shift: Internal References and Solvent Effects
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...


