Related Experiment Video
Updated: Jun 5, 2026

08:57
Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
Published on: August 14, 2018
Rethinking the Last Universal Common Ancestor of Life: Network Convergence and the Root of the Tree
Jessica C Bowman1,2, Nigel Goldenfeld3, Karyn L Rogers4,5
1NASA Center for Integration of the Origins of Life (iCOOL), Georgia Institute of Technology, Atlanta, Atlanta, Georgia, USA.
Astrobiology
|June 4, 2026
Summary
Life
Area of Science:
- Origin of Life Studies
- Biochemistry
- Evolutionary Biology
Background:
- The origin of life remains a fundamental question in science.
- One model suggests core biochemistry arose from a single origin, a 'frozen accident'.
- An alternative model proposes diverse biochemistries emerged and converged.
Purpose of the Study:
- To explore an alternative model for the evolution of core biochemistry.
- To investigate the role of the 'network effect' in biochemical convergence.
- To re-evaluate the nature of the Last Universal Common Ancestor (LUCA).
Main Methods:
- Theoretical modeling of biochemical evolution.
- Analysis of the 'network effect' in biological systems.
- Comparison of model predictions with observational data.
Main Results:
- The network effect drove convergence of diverse biochemistries.
- LUCA is proposed as a process of convergence, not a single organism.
- Biochemical evolution was driven by compatibility and coordination.
Conclusions:
- Core biochemistry may be a result of evolutionary optimization, not just a 'frozen accident'.
- Evidence suggests molecular entanglement and coevolution in core biochemistry.
- Biosynthetic pathways appear to differ from prebiotic chemistry, supporting the proposed model.
Related Concept Videos
The Tree of Life - Bacteria, Archaea, Eukaryotes
The “tree of life” describes the evolution of life and the evolutionary relationships between organisms. The root of the tree is the common ancestor to all life on Earth. All other species radiate from this point, much like the branches of a tree. The numerous tips of these branches on the tree of life represent every living, or extant, species. Extinct species, which are species that no longer exist, can be found towards the center of the tree. Currently, these organisms, both extant and...
Phylogeny
Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire...
Microbial Phylogeny
Understanding the evolutionary relationships among microorganisms is fundamental to microbial ecology and taxonomy. Phylogenetic trees are essential tools for inferring these relationships, relying primarily on comparative analyses of molecular sequences such as DNA, RNA, or proteins. In microbial studies, these trees typically depict the evolutionary paths of diverse bacterial and archaeal species by mapping genetic differences accumulated over time.Phylogenetic trees are composed of tips,...
Origin of Cellular Life
The origin of life on Earth is a complex and enigmatic event rooted in ancient biochemical processes and geological conditions. Experimental evidence supports the hypothesis that life began with the spontaneous formation of organic molecules such as RNA nucleotides, amino acids, and lipids under early Earth conditions. Factors like volcanic activity, intense UV radiation, and a reducing atmosphere without free oxygen likely facilitated these reactions. Hydrothermal vents on the ocean floor are...
Evolutionary Relationships through Genome Comparisons
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Eukaryotic Evolution
The endosymbiont theory is the most widely accepted theory of eukaryotic evolution; however, its progression is still somewhat debated. According to the nucleus-first hypothesis, the ancestral prokaryote first evolved a membrane to enclose DNA and form the nucleus. Conversely, the mitochondria-first hypothesis suggests that the nucleus was formed after endosymbiosis of mitochondria.
Contrary to the endosymbiont theory, the eukaryote-first hypothesis proposes that the simpler prokaryotic and...
Contrary to the endosymbiont theory, the eukaryote-first hypothesis proposes that the simpler prokaryotic and...

