Short-term oxycodone exposure produces delayed and persistent gut microbiome disruption in mice
Junyi Tao1, Daniel Gomez1, Yaa F Abu1
1Department of Surgery, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Biorxiv : the Preprint Server for Biology
|June 5, 2026
Summary
Brief oxycodone exposure caused long-term gut microbiome disruption in mice, with significant changes persisting for over two months. This delayed dysbiosis suggests a prolonged recovery period, highlighting potential risks even from short-term opioid use.
Area of Science:
- Microbiology
- Pharmacology
- Host-Microbiome Interactions
Background:
- The gut microbiome plays a crucial role in host homeostasis.
- Opioid-induced gut dysbiosis is recognized, but long-term recovery dynamics are unclear.
- Short-term opioid exposure is often assumed to cause only transient gut microbiome disruption.
Purpose of the Study:
- To characterize the temporal dynamics of the fecal microbiota following a brief oxycodone regimen in mice.
- To determine the long-term recovery patterns of the gut microbiome after short-term opioid exposure.
Main Methods:
- Male C57BL/6J mice were administered oxycodone (5mg/kg, BID) for 3 days.
- Fecal samples were collected at baseline, day 3, 10, 17, and 70.
- 16S rRNA gene sequencing was used to analyze microbial community structure and diversity.
Main Results:
- While acute phases showed subtle shifts, significant gut microbial community disruption emerged later, by day 17.
- By day 70, both alpha and beta diversity remained significantly altered compared to controls.
- Specific taxa like *Akkermansia* and *Marvinbryantia* were enriched, while *Eubacterium_xylanophilum* was depleted at day 70.
Conclusions:
- Even brief oxycodone exposure triggers persistent, non-recovering gut dysbiosis.
- Microbiome recovery exceeded two months in mice, suggesting potential long-term risks for patients on short-term opioid courses.
- Delayed and persistent alterations indicate that short-term opioid use may lead to longer-lasting gut microbiome remodeling than previously assumed.
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