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Published on: October 6, 2019
IRF2 is an essential transcription factor with pathogenic and prognostic impact in multiple myeloma
Nahia Gómez-Echarte1,2, Arantxa Carrasco-Leon1,2,3, Alba Maiques-Diaz4
1Center for Applied Medical Research, Universidad de Navarra, Navarra Medical Research Institute, Pamplona, Spain.
Abstract:
Multiple myeloma (MM), the second most prevalent hematologic malignancy, remains incurable, highlighting the need to identify molecular drivers of disease progression and new therapies. Using a CRISPR-Cas9 library screening approach in MM cells, we identified 22 essential transcription factors (TFs), including members of the interferon regulatory factor (IRF) family. Remarkably, in addition to the well-known IRF4, IRF2 emerged as a critical TF in MM. Cleavage under targets and release using nuclease (CUT&RUN) experiments demonstrated that IRF2 binds extensively to chromatin, both independently and in cooperation with IRF1 and IRF4. Although IRF2-unique regions were predominantly associated with active promoters, regions bound by IRF2/1/4 were biased toward introns. Functionally, IRF2 contributes to MM cell survival by suppressing necroptosis and promoting cell migration. Notably, IRF2-dependent transcriptional dysregulation was evident in precursor conditions such as monoclonal gammopathy of undetermined significance (MGUS) and smoldering MM (SMM), suggesting a role in early disease evolution. In addition to its role as an early factor, IRF2 levels also seem to influence disease progression, as MMs with higher expression demonstrated worse progression-free survival (PFS) and overall survival (OS) in both univariate and multivariate analyses, even after adjusting for common MM genetic risk factors. In conclusion, IRF2 constitutes an underappreciated essential TF involved in the pathogenesis and clinical behavior of MM. Its inhibition leads to dysregulation of key signaling pathways in MM pathogenesis, highlighting its potential as a therapeutic target.
Insights
Interferon regulatory factor 2 (IRF2) is a crucial transcription factor in multiple myeloma (MM) progression. Targeting IRF2 may offer new therapeutic strategies for this incurable hematologic malignancy.
Area of Science:
- Hematologic Malignancies
- Molecular Biology
- Cancer Genomics
Background:
- Multiple Myeloma (MM) is the second most common blood cancer and currently incurable.
- Identifying molecular drivers of MM progression is crucial for developing novel therapies.
Purpose of the Study:
- To identify essential transcription factors (TFs) in MM pathogenesis using CRISPR-Cas9 screening.
- To investigate the role of IRF2 in MM cell survival, migration, and disease progression.
Main Methods:
- CRISPR-Cas9 library screening was employed to identify essential TFs in MM cells.
- Cut&Run experiments were performed to assess IRF2 chromatin binding.
- Analysis of IRF2 expression in relation to MM progression and patient survival was conducted.
Main Results:
- IRF2 was identified as a critical TF in MM, alongside IRF4.
- IRF2 binds extensively to chromatin and influences MM cell survival by suppressing necroptosis and promoting migration.
- Higher IRF2 expression correlated with worse progression-free and overall survival in MM patients.
- IRF2-dependent transcriptional dysregulation was observed in precursor conditions like MGUS and SMM.
Conclusions:
- IRF2 is an underappreciated TF essential for MM pathogenesis and clinical behavior.
- IRF2 inhibition disrupts key signaling pathways in MM, suggesting its potential as a therapeutic target.
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