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Updated: Jun 9, 2026

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Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
Published on: October 11, 2018
Fast Calculation of Feature Contributions in Boosting Trees
Zhongli Jiang1, Min Zhang1, Dabao Zhang1
1Department of Epidemiology & Biostatistics, University of California, Irvine, CA, USA.
Summary
We introduce Q-SHAP, an efficient algorithm for calculating Shapley values with quadratic losses. This method improves computational speed and accuracy for feature contribution analysis in tree models.
Area of Science:
- Machine Learning
- Explainable AI
- Computational Statistics
Background:
- Fast algorithms exist for Shapley value decomposition in tree models, enabling local feature attribution.
- Global evaluation of feature contributions is needed, but individualizing coefficients of determination (R^2) is difficult due to quadratic losses.
Purpose of the Study:
- To propose Q-SHAP, an efficient algorithm for calculating Shapley values under quadratic losses.
- To improve computational efficiency and accuracy in feature-specific R^2 estimation.
Main Methods:
- Developed Q-SHAP, an algorithm reducing Shapley value computation for quadratic losses to polynomial time.
- Conducted simulations to evaluate Q-SHAP's performance.
Main Results:
- Q-SHAP significantly improves computational efficiency.
- Q-SHAP enhances the accuracy of feature-specific R^2 estimates.
Conclusions:
- Q-SHAP provides an efficient and accurate method for global feature contribution analysis in tree models.
- The algorithm addresses the challenges of individualizing R^2 with quadratic losses.
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