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A Stacked Ensemble Multi-Label Model for Predicting Co-Occurring Microvascular and Macrovascular Complications in
Maryam Zamani1,2, Maryam Farhadian1,3, Nasrin Piran1
1Department of Biostatistics, School of Public Health Hamadan University of Medical Sciences Hamadan Iran.
Chronic Diseases and Translational Medicine
|June 8, 2026
Summary
This study introduces a stacked ensemble machine learning model to predict co-occurring type 2 diabetes complications. The model accurately identifies distinct risk factors for microvascular and macrovascular issues, enabling targeted management.
Area of Science:
- Medical Informatics
- Machine Learning in Healthcare
- Diabetes Research
Background:
- Type 2 diabetes mellitus (T2DM) causes severe microvascular and macrovascular complications.
- Existing single-label prediction models inadequately address the co-occurrence of these complications.
- There is a need for integrated approaches to jointly predict diabetes-related complications.
Purpose of the Study:
- To develop a stacked ensemble multi-label framework for the joint prediction of T2DM complications.
- To integrate machine learning techniques into a clinically interpretable model.
- To identify distinct risk factors for co-occurring microvascular and macrovascular complications.
Main Methods:
- A retrospective study included 965 T2DM patients.
- Complications were categorized into microvascular and macrovascular groups.
- A class-weighted stacking ensemble model (Stacking-CC) was developed using Random Forest, Light GBM, and Cat Boost, with a logistic regression meta-learner, evaluated via cross-validation and SHAP analysis.
Main Results:
- The Stacking-CC model demonstrated superior performance with an F1-score of 0.752 ± 0.049 and AUC of 0.857 ± 0.032.
- SHAP analysis revealed distinct risk profiles: macrovascular complications linked to LDL cholesterol and diastolic blood pressure; microvascular complications linked to drug addiction, fasting blood sugar, and HDL.
- Conventional factors like age and BMI showed minimal importance.
Conclusions:
- The Stacking-CC framework accurately models co-occurring diabetic complications with high interpretability.
- The model's ability to delineate distinct risk hierarchies supports targeted, complication-specific management strategies.
- This approach enhances clinical decision-making for T2DM patients.
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