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Benchmarking machine learning architectures for menstrual recovery prediction using physiologically informed
Lillian Shen1,2, Pouria Mortezaagha3,4, Arya Rahgozar3,4
1Ottawa Hospital Research Institute, Ottawa, Canada. lillianshen88@gmail.com.
Scientific Reports
|June 8, 2026
Summary
This study introduces a new machine learning framework to predict menstrual recovery using wearable device data and self-reports. The model shows high accuracy, identifying stress and heart rate variability as key factors for recovery.
Area of Science:
- Reproductive Endocrinology
- Biomedical Data Science
- Machine Learning in Healthcare
Background:
- Secondary amenorrhea impacts reproductive, cardiovascular, and bone health.
- Current machine learning in menstrual health primarily focuses on cycle prediction, not pathological recovery.
- There is a need for advanced modeling of menstrual recovery in clinical settings.
Purpose of the Study:
- To develop and validate a proof-of-concept framework for modeling menstrual recovery within three months.
- To utilize non-invasive wearable-derived physiological features and self-reported data for prediction.
- To establish a foundation for wearable-based menstrual health monitoring.
Main Methods:
- A synthetically generated dataset of 5000 individuals was used.
- Twelve machine learning models were evaluated, including baseline and longitudinal configurations.
- XGBoost was employed, with SHAP analysis for feature importance and ablation studies.
Main Results:
- The best-performing XGBoost model achieved an AUC of 0.914.
- Baseline features significantly contributed to the predictive signal (ΔAUC = 0.020).
- Perceived stress and heart rate variability were identified as dominant predictors.
Conclusions:
- The developed framework demonstrates a viable approach for wearable-based menstrual recovery modeling.
- The findings highlight the potential of integrating routinely captured wearable data for health insights.
- Further clinical validation and integration into health monitoring systems are necessary.