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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Case Report: a novel PNPLA2 homozygous frameshift variant causing severe neutral lipid storage disease with myopathy
Elena Faedo1,2, Mary Marcela Araujo Chumacero3, Sara Missaglia4,5
1Reference Center for Neuromuscular Disorders, APHP Henri Mondor University Hospital, Créteil, France.
Abstract:
Neutral lipid storage disease with myopathy (NLSDM) is an ultra-rare autosomal recessive lipid metabolism disorder caused by PNPLA2 variants, leading to defective adipose triglyceride lipase (ATGL) function and pathological triglyceride accumulation in multiple tissues. Fewer than 150 cases have been reported worldwide, and the clinical spectrum remains incompletely defined. A 57-year-old Moroccan man presented with diabetes, hearing loss, cataracts, hypertrophic cardiomyopathy, and asymmetric weakness. Whole-body muscle MRI revealed severe fatty infiltration of the supraspinatus muscles in the upper limbs and asymmetric right biceps femoris and left lateral gastrocnemius muscle with a patchy pattern in the lower limbs. A deltoid muscle biopsy revealed vacuoles filled with lipids. Peripheral blood smear analysis showed Jordans' anomaly. Next-generation sequencing disclosed the novel homozygous c.1043del, p.Phe348SerfsTer18 PNPLA2 frameshift variant predicted to disrupt the adipose triglyceride lipase (ATGL) patatin domain. Bioinformatics protein modeling predicted disruption of the patatin domain and global structural instability, likely abolishing enzymatic activity. Western blotting performed on patient-derived muscle tissue revealed a truncated ATGL protein, functionally validating the truncating effect of this novel variant. This case broadens the phenotypic and molecular understanding of NLSDM.
Insights
Neutral lipid storage disease with myopathy (NLSDM) is a rare genetic disorder affecting lipid metabolism. A novel PNPLA2 variant was identified in a patient, expanding our understanding of this condition.
Area of Science:
- Genetics
- Metabolic Disorders
- Molecular Biology
Background:
- Neutral lipid storage disease with myopathy (NLSDM) is an ultra-rare autosomal recessive disorder.
- It stems from PNPLA2 variants, impairing adipose triglyceride lipase (ATGL) and causing triglyceride buildup.
- The clinical spectrum and molecular basis of NLSDM are not fully understood.
Purpose of the Study:
- To characterize a novel PNPLA2 variant in a patient with NLSDM.
- To expand the phenotypic and molecular understanding of NLSDM.
Main Methods:
- Clinical presentation and diagnostic workup of a 57-year-old Moroccan man.
- Whole-body muscle MRI, deltoid muscle biopsy, peripheral blood smear analysis.
- Next-generation sequencing, bioinformatics protein modeling, and Western blotting.
Main Results:
- The patient presented with diabetes, hearing loss, cataracts, hypertrophic cardiomyopathy, and asymmetric weakness.
- Muscle MRI showed severe fatty infiltration; muscle biopsy revealed lipid-filled vacuoles and Jordans' anomaly.
- A novel homozygous PNPLA2 frameshift variant (c.1043del, p.Phe348SerfsTer18) was identified, predicted to disrupt ATGL function.
- Protein modeling and Western blotting confirmed the variant leads to a truncated ATGL protein.
Conclusions:
- This case expands the known clinical and molecular spectrum of NLSDM.
- The identified PNPLA2 variant provides functional insights into ATGL deficiency.
- Further research is needed to fully elucidate NLSDM pathogenesis and therapeutic strategies.
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