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High-Resolution Three-Dimensional Whole-Organ Tomography of Microbial Infections
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Published on: March 1, 2024

Classification of bacterial images obtained optically using some pre-trained models.

Lizette Nange Chia1, Thomas Tamo Tatietse2, Gemma Piella3

  • 1Department of Physics, Research Unit of Condensed Matter, Electronics and Signal Processing, Faculty of Sciences, University of Dschang, P.O. Box 67, Cameroon; African Institute of Mathematical Sciences (AIMS), Limbe, P.O. Box 608, Cameroon.

Journal of Microbiological Methods
|June 10, 2026
PubMed
Summary
This summary is machine-generated.

This study introduces an AI framework for rapid water-borne bacteria detection using image classification. It accurately identifies Escherichia coli and Fecal streptococci, improving water quality monitoring.

Keywords:
Convolutional neural networks (CNNs)Image classificationResNetWater-borne bacteria

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Published on: November 19, 2018

Area of Science:

  • Microbiology
  • Computer Science
  • Environmental Science

Background:

  • Accurate detection of water-borne bacteria is crucial for public health.
  • Traditional methods are slow, costly, and require expertise, hindering automated monitoring.
  • There is a need for rapid, cost-effective bacterial identification systems.

Purpose of the Study:

  • To develop and evaluate an optical detection and classification framework for water-borne bacterial pathogens.
  • To utilize pre-trained convolutional neural network (CNN) architectures for automated image classification.
  • To distinguish between Escherichia coli (E. coli), Fecal streptococci (Strept), co-occurrence, and safe water.

Main Methods:

  • An optical detection system captured bacterial images.
  • Pre-trained CNN models (ResNet-50, ResNet-152, EfficientNet-B7, DenseNet-201) were employed for classification.
  • Performance was evaluated using accuracy, precision, recall, F1-score, and Receiver Operating Characteristic (ROC) analysis.

Main Results:

  • EfficientNet-B7 achieved the highest accuracy (95.54%), followed by ResNet-152 (94.45%) and ResNet-50 (94.15%).
  • Most models demonstrated precision, recall, and F1-scores exceeding 94%, with Area Under the Curve (AUC) over 98% for all bacterial classes.
  • DenseNet-201 showed lower performance (77.49% accuracy).

Conclusions:

  • Transfer learning-based CNNs offer accurate, rapid, and cost-effective bacterial detection.
  • The developed framework shows promise for scalable and automated water-quality monitoring.
  • This approach supports sustainable water, sanitation, and hygiene (WASH) initiatives.