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Related Concept Videos

Structure of Benzene: Molecular Orbital Model01:18

Structure of Benzene: Molecular Orbital Model

According to the molecular orbital (MO) model, benzene has a planar structure with a regular hexagon of six sp2 hybridized carbons. As shown in Figure 1, each carbon is bonded to three other atoms with C–C–C and H–C–C bond angles of 120°. The C–H bond length is 109 pm, and the C–C bond length is 139 pm which is midway between the single bond length of sp3 hybridized carbons (154 pm) and sp2 hybridized carbons (133 pm).
Structure of Benzene: Kekulé Model01:07

Structure of Benzene: Kekulé Model

In 1865, August Kekule suggested the structure of benzene according to the structural theory of organic chemistry based on the three assertions—formula of benzene is C6H6, all the hydrogens of benzene are equivalent, and each carbon must have four bonds due to its tetravalency.
He proposed that benzene has a cyclic structure of six carbon atoms attached to one hydrogen atom each, with three alternating pi bonds.
Predicting Molecular Geometry02:27

Predicting Molecular Geometry

VSEPR Theory for Determination of Electron Pair Geometries
Molecular Models02:00

Molecular Models

Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
Protein Organization01:24

Protein Organization

Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence.
Aromatic Hydrocarbon Cations: Structural Overview01:18

Aromatic Hydrocarbon Cations: Structural Overview

Cycloheptatriene is a neutral monocyclic unsaturated hydrocarbon that consists of an odd number of carbon atoms and an intervening sp3 carbon in the ring. The three double bonds in the ring correspond to 6 π electrons, which is a Huckel number, and therefore satisfies the criteria of 4n + 2 π electrons. However, the intervening sp3 carbon disrupts the continuous overlap of p orbitals. As a result, cycloheptatriene is not aromatic.
Removing one hydrogen from the intervening CH2 group with both...

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A Protocol for Computer-Based Protein Structure and Function Prediction
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Published on: November 3, 2011

Chemistry-Informed Machine Learning Framework for Predicting Structural Properties in Osmabenzene Complexes.

Linchao Zhu1,2,3, Xujie Qin1,2,3, Jun Chen1,4,2,3

  • 1State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, China.

The Journal of Physical Chemistry Letters
|June 11, 2026
PubMed
Summary
This summary is machine-generated.

Metallabenzenes exhibit non-planar structures, enhancing aromaticity via the sigma-control mechanism. Chemistry-informed machine learning accurately predicts this distortion, aiding the design of novel metalla-aromatic materials.

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Area of Science:

  • Organometallic Chemistry
  • Computational Chemistry
  • Materials Science

Background:

  • Metallabenzenes, metal-containing aromatic compounds, show significant out-of-plane distortion.
  • This non-planarity deviates from classical aromaticity rules but enhances aromatic character.
  • The phenomenon is explained by a sigma-orbital antibonding interaction, termed the sigma-control mechanism.

Purpose of the Study:

  • Investigate the structural properties of osmabenzene complexes.
  • Apply a chemistry-informed machine learning approach to predict non-planarity.
  • Validate the sigma-control mechanism and identify key factors influencing distortion.

Main Methods:

  • Compiled a dataset of 329 osmabenzene structures.
  • Developed mechanistically guided descriptors from coordination chemistry and molecular orbital theory.
  • Employed machine learning models, including those with orbital energy descriptors and ligand-level descriptors, alongside SHAP analysis.

Main Results:

  • Machine learning models with orbital energy descriptors achieved high predictive accuracy, confirming the sigma-control mechanism.
  • A chemically interpretable set of ligand-level descriptors maintained high performance (R² = 0.970, RMSE = 1.990°, MAE = 1.544°).
  • SHAP analysis identified axial ionization potential and equatorial polarizability as primary drivers of non-planarity.

Conclusions:

  • Demonstrated the efficacy of integrating mechanistic chemical insights into data-driven modeling.
  • Provided a practical framework for predicting and designing functional metalla-aromatic materials.
  • Highlighted the importance of the sigma-control mechanism in metallabenzene structural properties.