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Updated: Jun 13, 2026

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Multi-layer Cortical Ca2+ Imaging in Freely Moving Mice with Prism Probes and Miniaturized Fluorescence Microscopy
Published on: June 13, 2017
CortexCAM: A Camera Array Microscope for Cortex-Wide Cellular Imaging in Freely Locomoting Mice
Suhasa Kodandaramaiah1, Arun Cherkkil1, Zoey Viavattine1
1Department of Mechanical Engineering, University of Minnesota, Minneapolis, MN.
Research Square
|June 12, 2026
Summary
Researchers developed the Cortex Camera Array Microscope (CortexCAM) for simultaneous, wide-scale neuronal activity imaging. This system enables studying brain-wide cellular dynamics in freely moving mice during natural behaviors.
Area of Science:
- Systems Neuroscience
- Neuroimaging
- Cellular Neuroscience
Background:
- Understanding neuronal activity across brain regions during natural behaviors is crucial.
- Current methods often limit simultaneous imaging to small brain areas or require head-fixed preparations.
Purpose of the Study:
- To introduce a novel imaging system, the Cortex Camera Array Microscope (CortexCAM), for large-scale, simultaneous neuronal activity recording.
- To enable the study of cortex-wide neural dynamics in freely behaving animals during ethologically relevant tasks.
Main Methods:
- Developed the Cortex Camera Array Microscope (CortexCAM) integrating four miniaturized fluorescence microscopes.
- Integrated CortexCAM into a mobile gantry system for volitional motion control (translational and rotational).
- Enabled imaging of over 9000 neurons across dorsal cortical regions in freely locomoting mice.
Main Results:
- Achieved simultaneous, cortex-wide cellular resolution imaging over 48 mm2 of the dorsal cortex.
- Successfully imaged neuronal activity in motor, somatosensory, visual, retrosplenial, and association cortices.
- Demonstrated imaging during volitional movement, choice tasks, and social interactions in mice.
Conclusions:
- The mobile CortexCAM system facilitates studying brain-wide neural dynamics during naturalistic behaviors.
- This technology overcomes limitations of head-fixed preparations for systems neuroscience research.
- Enables novel insights into neural circuits underlying complex behaviors.

