Related Experiment Video
Updated: Jun 13, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways
Published on: February 8, 2017
TabularQual: A spreadsheet-based format for annotating and curating logical models in SBML-qual
Luna Xingyu Li1, Carissa Bleker2, Sylvain Soliman3
1Department of Medical Education and Biomedical Informatics, University of Washington, Seattle, United States.
None:
Logical models are widely used to study regulatory and signaling systems, yet their reuse, annotation, and exchange across tools remain challenging. Although SBML Level 3 Qualitative Models (SBML-qual) provides a standard representation, its XML-based syntax is difficult to inspect and edit directly. Here we introduce TabularQual, a spreadsheet-based, community-driven representation for Boolean and multi-valued logical models, together with a bidirectional converter between spreadsheets and SBML-qual. The converter is accessible programmatically and via a web interface to support diverse user workflows. We further describe two integration strategies that enable existing modeling tools to operate with TabularQual, either through SBML-qual exchange or via direct support. Case studies using the Stress Knowledge Map and CaSQ demonstrate how this integration supports model construction, curation, and reuse. TabularQual provides a practical bridge between human-readable model representations and standardized executable formats, supporting reproducibility, interoperability, and community-driven model development.
More Related Videos
Related Concept Videos
Qualitative Analysis
There are two main approaches to qualitative analysis:...
Qualitative Analysis
For instance, group IV...
Bar Graph
Molecular Models
Base Quantities and Derived Quantities
The International Organization for...
Schemata
Two types of schemata are:
