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Updated: Jun 14, 2026

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Amplifying and Quantifying HIV-1 RNA in HIV Infected Individuals with Viral Loads Below the Limit of Detection by Standard Clinical Assays
Published on: September 26, 2011
Variability in HIV viral load quantification in real-world service delivery settings: findings from an observational
Gad Murenzi1,2, Ellen Brazier3, Marie Gertrude Rutwaza4,5
1College of Medicine and Health Sciences, University of Rwanda, Kigali, Rwanda. gadcollins@gmail.com.
BMC Infectious Diseases
|June 13, 2026
Summary
Viral load (VL) testing shows significant variation between laboratories and assays, especially at lower quantification limits. Higher thresholds, like those in UNAIDS 95-95-95 targets, show better agreement for clinical decisions.
Area of Science:
- Virology
- Clinical Diagnostics
- Public Health
Background:
- Advancements in HIV viral load (VL) testing improve low-level viremia detection.
- Significant variability exists in quantitative results from polymerase chain reaction (PCR) tests, particularly near assay lower limits of quantification (LLOQ).
- Discrepancies in VL quantification can impact patient management and treatment monitoring.
Purpose of the Study:
- To compare VL testing results from two laboratories in Rwanda using different assays.
- To characterize discordancy in VL quantification between laboratories.
- To identify factors associated with quantifiable VL results at a threshold of 40 copies/mL.
Main Methods:
- An observational cohort study involved people living with HIV (PWH) aged ≥40 years.
- Paired research specimens were processed by two laboratories using different VL assays (Lab A: 20 copies/mL LLOQ; Lab B: 40 copies/mL LLOQ).
- Kappa statistics and Poisson regression were used to assess between-lab agreement and identify factors associated with unsuppressed VLs (≥200 copies/mL).
Main Results:
- 593 results from 572 participants were analyzed; mean age was 54.4 years, 58% female.
- Quantifiable VLs at 20 copies/mL (Lab A) were 29.2%, compared to 4.7% at 40 copies/mL (Lab B).
- Poor to moderate agreement was observed below 200 copies/mL, with high agreement at 1000 and 2000 copies/mL; low CD4 counts (<200 cells/mm³) were linked to unsuppressed VLs.
Conclusions:
- Substantial differences in VL quantification exist between assays and laboratories in real-world settings.
- High agreement was found at higher viral load cut-offs commonly used in clinical decision-making.
- Findings support using higher viral suppression thresholds, aligning with UNAIDS 95-95-95 targets, to avoid misclassification at lower levels.

