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Updated: Jun 16, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Enhanced resistance to macrolides and tetracyclines due to cooperation among plasmid-encoded genes associated with
David E Cummings1, Mercedes I Coppola1, Adele M Gargiulo1
1Department of Biology, Point Loma Nazarene University, San Diego, CA 92106, United States of America.
Abstract:
Antibiotic resistance genes associated with IS26-family mobile genetic elements are globally distributed in the Gram-negative plasmidome. In many cases, antibiotic resistance genes are co-located with genes of unknown function. Two particular IS26-associated gene clusters, mph(A)-mrx-mphR(A) and cysH-eamA-tet(A)-tetR(A), are prevalent on plasmids and chromosomes of common Gram-negative pathogens. While mph(A) encodes a macrolide phosphotransferase and tet(A) encodes a tetracycline efflux pump, the roles, if any, of mrx, cysH, and eamA remain poorly understood. To test the hypothesis that these genes consistently co-located with mph(A) and tet(A) act cooperatively to enhance antibiotic resistance, recombinant E. coli strains carrying various genetic combinations from each cluster were subjected to antimicrobial susceptibility testing. While the mph(A) gene alone provided minimal protection from azithromycin, inclusion of mrx increased resistance by at least 48-fold. Disruption of mrx by the insertion of a nonsense mutation or the addition of an efflux pump inhibitor abrogated this effect, indicating that the Mrx protein is a drug exporter that is required for maximal effect. In the absence of mph(A), mrx had no effect on azithromycin resistance, suggesting that Mrx only effluxes the phosphorylated form of azithromycin. Similarly, inclusion of cysH-eamA with tet(A) increased resistance to tetracycline antibiotics by at least 2-fold over tet(A) alone. Disruption of either cysH or eamA had no effect on this enhancement, but disruption of both genes eliminated it entirely. A more complete understanding of antibiotic resistance among Gram-negative bacteria requires elucidation of the roles of modulator genes co-located with primary resistance genes on mobile genetic elements.
Insights
Mobile genetic elements enhance antibiotic resistance in Gram-negative bacteria. Co-located genes like mrx and cysH-eamA significantly boost resistance to macrolides and tetracyclines, respectively, by acting as drug exporters.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Antibiotic resistance genes (ARGs) are frequently found on mobile genetic elements (MGEs) in Gram-negative bacteria.
- IS26-family MGEs often carry ARGs alongside genes with unknown functions.
- Specific gene clusters, mph(A)-mrx-mphR(A) and cysH-eamA-tet(A)-tetR(A), are common in Gram-negative pathogens.
Purpose of the Study:
- To investigate the synergistic roles of co-located genes with known ARGs (mph(A) and tet(A)) in enhancing antibiotic resistance.
- To determine the function of previously uncharacterized genes (mrx, cysH, eamA) within these clusters.
Main Methods:
- Construction of recombinant Escherichia coli strains containing various combinations of genes from the identified clusters.
- Antimicrobial susceptibility testing of engineered strains against macrolide and tetracycline antibiotics.
- Genetic manipulation, including nonsense mutations and gene disruption, to assess gene function.
Main Results:
- The mph(A) gene alone conferred minimal azithromycin resistance, but co-expression with mrx increased resistance by at least 48-fold.
- The Mrx protein functions as a drug exporter, specifically effluxing phosphorylated azithromycin, and is essential for maximal macrolide resistance.
- Co-expression of cysH-eamA with tet(A) increased tetracycline resistance by at least 2-fold; both cysH and eamA are required for this enhancement.
Conclusions:
- Genes co-located with ARGs on MGEs can significantly modulate antibiotic resistance levels.
- The Mrx and CysH-EamA protein complexes play crucial roles in conferring resistance to macrolides and tetracyclines, respectively.
- Understanding these modulator genes is vital for a comprehensive grasp of antibiotic resistance mechanisms in Gram-negative bacteria.
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