High prevalence and clinical impact of microbial co-detection in hospitalized children with human parainfluenza virus

Chunyun Fu1, Xiaoying Chen1, Lishai Mo1

  • 1Medical Science Laboratory, Children's Hospital, Maternal and Child Health Hospital of Guangxi Zhuang Autonomous Region, Nanning, People's Republic of China.

Microbiology Spectrum
|June 16, 2026
PubMed

Insights

Human parainfluenza virus type 1 (HPIV-1) often co-infects with other pathogens in children with acute respiratory infections (ARI). Co-detection, especially with bacteria, is linked to more severe illness and increased healthcare costs.

Area of Science:

  • Pediatric infectious diseases
  • Respiratory medicine
  • Microbiology

Background:

  • Human parainfluenza virus type 1 (HPIV-1) is an underrecognized cause of pediatric acute respiratory infections (ARI).
  • The clinical impact of HPIV-1, especially with co-detection of other microbes, is not well-defined.
  • Understanding HPIV-1's role is crucial for managing pediatric respiratory illnesses.

Purpose of the Study:

  • To investigate the clinical features and outcomes of HPIV-1 in hospitalized children with ARI.
  • To determine the prevalence and patterns of microbial co-detection in HPIV-1 positive cases.
  • To identify predictors of severe pneumonia in HPIV-1 associated ARI.

Main Methods:

  • Targeted next-generation sequencing (tNGS) was used to detect respiratory pathogens in 9,394 hospitalized children with ARI.
  • Clinical data were compared between HPIV-1 mono-detection and co-detection groups.
  • Severity of pneumonia was assessed, and predictors of severe cases were analyzed.

Main Results:

  • HPIV-1 was detected in 1.7% of children, primarily those aged 6 months to 2 years.
  • Microbial co-detection occurred in 95.7% of HPIV-1 positive cases, with viral-bacterial co-infection being most common.
  • Co-detection was associated with older age, longer hospitalization, and higher costs compared to mono-detection.

Conclusions:

  • HPIV-1 detection in pediatric ARI is frequently associated with co-detection of other pathogens, predominantly bacteria.
  • Co-detection with HPIV-1 correlates with increased disease severity and poorer clinical outcomes.
  • Elevated inflammatory markers, prolonged fever, and need for respiratory support predict severe pneumonia in HPIV-1 positive children.

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