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Plasmid-borne mcr-4.3 in Acinetobacter nosocomialis recovered from imported beef cattle: Genomic characterization and
Hao Xu1,2, Yaling Li1,3, Shaohua Hu1
1State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, China-Singapore Belt and Road Joint Laboratory on Infection Research and Drug Development, National Medical Center for Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Background:
The emergence of mobile colistin resistance determinants in clinically relevant Acinetobacter species poses a growing challenge to antimicrobial stewardship and One Health surveillance. Although mcr-4.3 has been reported in Acinetobacter, its occurrence in imported food animals and its broader phylogenomic context remain poorly defined.
Methods:
We investigated fecal samples collected from 150 beef cattle imported from Australia to China. Acinetobacter isolates recovered by selective culture were subjected to whole-genome sequencing, and the mcr-4.3-positive isolate was further resolved by hybrid assembly using short- and long-read sequencing. Comparative plasmid analysis and global phylogenomic analysis were performed using publicly available A. nosocomialis genomes.
Results:
Among 54 Acinetobacter isolates recovered from imported cattle, one A. nosocomialis isolate, NB148, carried mcr-4.3. Complete genome sequencing showed that mcr-4.3 was located on a 28,233-bp plasmid, designated pNB148_mcr-4.3, which harbored plasmid maintenance-associated toxin-antitoxin systems and shared substantial backbone similarity with previously reported mcr-4.3-bearing plasmids from Acinetobacter species. The mcr-4.3 region was positioned downstream of a putative recombinase and a Tn3-family transposase, suggesting a conserved genetic framework for this resistance determinant. Global phylogenomic analysis incorporating 574 publicly available A. nosocomialis genomes placed NB148 within a diverse international population characterized by mixing across animal, environmental, and human sources. Among the global collection, 11 genomes carried mcr-4.3, of which 10 belonged to ST279, indicating that this lineage may represent an important genomic background for the persistence and international distribution of mcr-4.3-positive A. nosocomialis.
Conclusions:
This study documents plasmid-borne mcr-4.3 in A. nosocomialis recovered from imported beef cattle and places this finding within a broader international One Health context. Our data expand the known ecological range of mcr-4.3-positive A. nosocomialis and support strengthened genomic surveillance at animal-human-environment interfaces, particularly in importation and border inspection settings.
Insights
Mobile colistin resistance gene mcr-4.3 was found in Acinetobacter nosocomialis from imported cattle. This highlights the need for genomic surveillance at animal-human-environment interfaces.
Area of Science:
- Microbiology
- Genomics
- Antimicrobial Resistance
Background:
- Mobile colistin resistance genes (mcr) in Acinetobacter species are a growing concern for antimicrobial stewardship and One Health surveillance.
- The presence and genomic context of mcr-4.3 in food animals, specifically imported cattle, require further investigation.
Purpose of the Study:
- To investigate the occurrence of mcr-4.3 in Acinetobacter isolates from imported beef cattle.
- To determine the phylogenetic context and plasmid location of mcr-4.3 in Acinetobacter nosocomialis.
Main Methods:
- Fecal samples from 150 imported beef cattle were cultured for Acinetobacter isolates.
- Whole-genome sequencing and hybrid assembly were used to analyze mcr-4.3-positive isolates and plasmids.
- Comparative plasmid and global phylogenomic analyses were performed using public Acinetobacter nosocomialis genomes.
Main Results:
- One Acinetobacter nosocomialis isolate (NB148) from imported cattle carried mcr-4.3 on a plasmid (pNB148_mcr-4.3).
- The mcr-4.3 region was associated with mobile genetic elements, suggesting conserved mechanisms for its spread.
- Phylogenomic analysis revealed NB148 belonged to a diverse international population, with mcr-4.3 predominantly found in ST279 Acinetobacter nosocomialis.
Conclusions:
- This study documents plasmid-borne mcr-4.3 in Acinetobacter nosocomialis from imported cattle, expanding its known ecological range.
- Findings underscore the importance of genomic surveillance at interfaces between animals, humans, and the environment, especially in import settings.
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