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Distribution of mrk genes among uopathogenic Klebsiella pneumoniae
Abbas Fallah Vosoughi1, Fatemeh Foroohi1, Shervindokht Ahmadi1
1Department of Microbiology, ShQ.C., Islamic Azad University, Shahr-E Qods, Iran.
Abstract:
The mrk operon gene clusters encode type 3 fimbriae, involving in biofilm formation. Hence, we aimed to find out the distribution of mrk genes among uropathogenic Klebsiella pneumoniae (UPKP) strains. Moreover, mrk genes, hypermucoviscosity (HMV) characteristic and antimicrobial resistance (AMR) patterns and profiles were successfully, provided. From August 2023 to January 2024, 104 positive urine samples were collected. Standard microbiological and biochemical tests were employed to confirm the UPKP strains. Kirby-Bauer disc diffusion method was recruited to conduct antimicrobial susceptibility test (AST). The HMV characteristic in UPKP isolates was assessed using the string test. Finally, multiplex polymerase chain reaction (mPCR) was used to identify mrk genes distribution. Chi-square (χ2) and Fisher's exact tests were utilized for statistical analysis. The mrk gene distribution varied among the UPKP isolates comprising mrkA (1.92%), mrkB (0.00%), mrkC (5.77%), mrkD (23.08%), mrkE (37.50%), and mrkF (83.65%). No mrk genes were detected among 13.46% (14/104) of UPKP isolates. The most common mrk gene patterns involved mrkF (32.70%), mrkE-mrkF (25.00%), and mrkD-mrkF (11.54%). In addition, the isolates exhibited diverse AMR profiles and phenotypes including: 65 multi-drug resistant (MDR) strains (nine groups, 42 patterns), 13 extensively drug-resistant (XDR) strains (nine patterns), nine pan drug-resistant (PDR) strains, 23 ESBL producers, and nine HMV isolates. None of the HMV strains displayed XDR, PDR, or ESBL phenotypes, suggesting limited horizontal gene transfer (HGT). Detailed analysis of mrk genes and AMR characteristics in UPKP, provides essential information for selecting effective prevention protocols and treatments for urinary tract infections (UTIs) and combating AMR.
Insights
This study investigated mrk genes in uropathogenic Klebsiella pneumoniae (UPKP), finding varied gene distribution and common antimicrobial resistance patterns. This informs better prevention and treatment strategies for urinary tract infections (UTIs).
Area of Science:
- Microbiology
- Genetics
- Infectious Diseases
Background:
- The mrk operon gene clusters are crucial for type 3 fimbriae, which play a role in biofilm formation.
- Uropathogenic Klebsiella pneumoniae (UPKP) is a significant cause of urinary tract infections (UTIs).
- Understanding the genetic makeup and resistance patterns of UPKP is essential for effective treatment.
Purpose of the Study:
- To determine the distribution of mrk genes among UPKP strains.
- To analyze the correlation between mrk genes, hypermucoviscosity (HMV), and antimicrobial resistance (AMR) patterns in UPKP.
- To provide data for developing targeted prevention and treatment protocols for UTIs caused by UPKP.
Main Methods:
- Collection and microbiological confirmation of 104 UPKP isolates from urine samples.
- Antimicrobial susceptibility testing using the Kirby-Bauer disc diffusion method.
- Assessment of hypermucoviscosity (HMV) using the string test and mrk gene distribution via multiplex polymerase chain reaction (mPCR).
Main Results:
- mrk gene distribution varied, with mrkF (83.65%), mrkE (37.50%), and mrkD (23.08%) being the most prevalent.
- 13.46% of UPKP isolates lacked detectable mrk genes.
- Isolates showed diverse AMR profiles, including multi-drug resistant (MDR), extensively drug-resistant (XDR), pan drug-resistant (PDR), and ESBL-producing strains. Notably, HMV strains did not exhibit XDR, PDR, or ESBL phenotypes.
Conclusions:
- The study successfully characterized mrk gene distribution, HMV, and AMR profiles in UPKP.
- The observed limited horizontal gene transfer (HGT) between HMV and highly resistant strains suggests specific evolutionary pathways.
- These findings offer critical insights for combating AMR and managing UTIs effectively.
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