Related Experiment Video
Updated: Jun 21, 2026

Characterization of Complex Systems Using the Design of Experiments Approach: Transient Protein Expression in Tobacco as a Case Study
Published on: January 31, 2014
Construction of an Interpretable Regression Model for Yield Prediction and Mechanistic Insight Enabled by Automated
Takahiro Doba1, Yu Harabuchi2,3, Yuuya Nagata2,3
1International Research Center for Elements Science, Institute for Chemical Research, Kyoto University, Kyoto 611-0011, Japan.
Abstract:
In the past decade, machine learning has emerged as a powerful tool to predict reaction outcomes. However, mechanistic interpretability of the constructed machine learning models remains limited due to the use of domain-specific and often arbitrary descriptors. Herein we demonstrate that an energy descriptor comprising the energies of the possible intermediates in the reaction system serves as a physically motivated representation for constructing interpretable regression models that provide mechanistic insight. The energy descriptor was calculated using the single-component artificial force induced reaction (SC-AFIR) method, which autonomously and comprehensively searches for intermediates of a target reaction, and subsequently used to train regression models for reaction yield prediction. Linear models with regularization showed good predictions for the hold-out samples (RMSE < 7% yield) and the coefficients of the models provided information on how the energies of the intermediates relate to the reaction outcome. This work highlights the utility of energy descriptors in constructing mechanistically interpretable regression models for predictive tasks in chemistry.
Related Concept Videos
Predicting Reaction Outcomes
Multiple Regression
Farmers can use multiple regression to determine the crop yield based on more than one factor, such as water availability, fertilizer, soil properties, etc. Here, the crop yield is the response or dependent variable as it depends on the other independent variables. The analysis requires the construction of a scatter plot...
Regression Analysis
In regression analysis, a regression equation is determined based on the line of best fit– a line that best fits the data points plotted in a graph. This line is also called the regression line. The algebraic equation for the regression line is called the regression equation. It is represented as:
Mechanistic Models: Compartment Models in Individual and Population Analysis
Bioreactor Controls-III
Methods of Medium Optimization
