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Related Concept Videos

Super-resolution Fluorescence Microscopy01:37

Super-resolution Fluorescence Microscopy

Super-resolution fluorescence microscopy (SRFM) provides a better resolution than conventional fluorescence microscopy by reducing the point spread function (PSF). PSF is the light intensity distribution from a point that causes it to appear blurred. Due to PSF, each fluorescing point appears bigger than its actual size, and it is the PSF interference of nearby fluorophores that causes the blurred image. Various approaches to achieving higher resolution through SRFM have recently been developed.
Confocal Fluorescence Microscopy01:16

Confocal Fluorescence Microscopy

Confocal microscopy is an advanced microscopic technique. The prime advantage of the confocal microscope over other microscopy techniques is its ability to block the out-of-focus light from the illuminated samples using pinholes. It is widely used with fluorescence optics to obtain high-resolution, sharp contrast images. Unlike optical microscopes, confocal microscopes use a focused beam of light laser to scan the entire sample surface at different z-planes. These microscopes are, therefore,...
Protein Dynamics in Living Cells01:19

Protein Dynamics in Living Cells

Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...

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Related Experiment Video

Updated: Jun 23, 2026

High-resolution Spatiotemporal Analysis of Receptor Dynamics by Single-molecule Fluorescence Microscopy
15:13

High-resolution Spatiotemporal Analysis of Receptor Dynamics by Single-molecule Fluorescence Microscopy

Published on: July 25, 2014

Time-of-flight fluorescence depth mapping using a spatiotemporal deep learning model.

Shiru Wang1, Arthur Pétusseau1, Claudio Bruschini2

  • 1Dartmouth College, Thayer School of Engineering, Hanover, New Hampshire United States.

Journal of Biomedical Optics
|June 22, 2026
PubMed
Summary
This summary is machine-generated.

This study introduces a deep learning method using SPAD sensor images to map subsurface fluorescence depth, improving surgical precision. The system accurately reconstructs fluorescence topography, overcoming optical artifacts in real-time for enhanced surgical guidance.

Keywords:
deep learningfluorescencesingle-photon avalanche diode sensortime-of-flighttopology

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Last Updated: Jun 23, 2026

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12:51

Simultaneous Multicolor Imaging of Biological Structures with Fluorescence Photoactivation Localization Microscopy

Published on: December 9, 2013

Area of Science:

  • Medical Imaging
  • Biophotonics
  • Artificial Intelligence

Background:

  • Fluorescence-guided surgery (FGS) uses molecular contrast agents for real-time visualization but is limited by optical artifacts like diffusion and absorption.
  • These artifacts hinder accurate quantitative assessment of fluorophore distribution, potentially compromising surgical precision.
  • Accurate sub-surface fluorescence imaging requires resolving topological depth maps at the millimeter scale.

Purpose of the Study:

  • To develop a spatiotemporal deep learning architecture for rapid recovery of fluorophore depth topology using picosecond single-photon avalanche diode (SPAD) sensor images.
  • To enable precise surgical decision-making by overcoming limitations in current FGS techniques.
  • To achieve millimeter spatial resolution in wide-field, epi-illumination geometry for sub-surface fluorescence imaging.

Main Methods:

  • A ConvLSTM-UNet deep learning network was developed for analyzing picosecond time-resolved images.
  • The network was trained on simulated spatiotemporal maps using optical Monte Carlo methods and the instrument response function (IRF).
  • The system utilized a SwissSPAD2 sensor synchronized with a picosecond laser diode, processing data from 10 temporal gates.

Main Results:

  • The deep learning network successfully reconstructed fluorescence topography up to 15 mm depth.
  • Reconstruction accuracy achieved a mean absolute error of less than 0.6 mm and mean depth variances below 0.5 mm.
  • The system demonstrated a rapid inference time of approximately 30 ms.

Conclusions:

  • Integrating temporal and spatial deep learning networks enables accurate depth mapping from time-resolved fluorescence data.
  • The use of real IRF confirmed the applicability of SPAD sensors for sub-surface fluorescence mapping.
  • This approach enhances the capabilities of fluorescence-guided surgery by providing quantitative depth information.