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Genetic Manipulation in Δku80 Strains for Functional Genomic Analysis of Toxoplasma gondii
Published on: July 12, 2013
Potential for the Terminal SKP1 Glycosyltransferase to Exert Non-Enzymatic Control of SKP1 in Toxoplasma gondii
Donovan A Cantrell1,2, Elisabet Gas-Pascual1,2,3, Christopher M West1,2,3,4
1Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30601 USA.
Abstract:
The SKP1/CUL1/F-Box protein (SCF) family of E3 ubiquitin ligases is responsible for targeting multiple proteins for degradation by the 26S proteosome. Within the family, multiple F-box proteins (FBPs) associate with the SKP1 adaptor which in turn docks to CUL1. In the human parasite Toxoplasma gondii, SKP1 is subject to oxygen-dependent regulation. Under normoxic conditions, the prolyl hydroxylase PHYa hydroxylates SKP1 priming it for modification by five SKP1-specific glycosyltransferase activities. Glycosylation weakens competing homodimerization of SKP1, and because SKP1 is limiting in cells, this affects the profile of bound FBPs. A previous study noted that the terminal SKP1 glycosyltransferase, GAT1, is a stable member of the SKP1 interactome regardless of SKP1's glycosylation status. Furthermore, gat1-knockout cells exhibit a unique repertoire of FBPs bound to SKP1 relative to normal and other glycosylation-defective mutants. Utilizing sedimentation velocity analytical ultracentrifugation, we demonstrate that the native GAT1 homodimer complexes with SKP1 monomers with affinity and stoichiometry dictated by its glycostate. Computational modeling validated by mutational probing shows that GAT1 competes with the core hydrophobic interface also utilized by FBPs and the SKP1 homodimer. This interface is complemented by varying, transient fuzzy-like interactions contributed by SKP1's intrinsically disordered C-terminal region (CTR) that are in turn constrained by the glycan. Furthermore, GAT1 substoichiometrically monomerizes SKP1 in a CTR-dependent manner. Thus, GAT1 is specific for monomeric SKP1, and the mechanism by which this is achieved also modifies the dimer/monomer equilibrium of unmodified SKP1 with downstream effects on the steady-state profile of FBP/SKP1 complexes in cells.
Insights
The SKP1/Cul1/F-Box (SCF) complex regulates protein degradation. In Toxoplasma gondii, GAT1 enzyme binding to SKP1 monomers, influenced by glycosylation, alters F-box protein interactions and substrate targeting.
Area of Science:
- Molecular and Cellular Biology
- Parasitology
- Biochemistry
Background:
- The SKP1/Cul1/F-Box (SCF) complex is a crucial E3 ubiquitin ligase controlling protein degradation via the 26S proteasome.
- F-box proteins (FBPs) confer substrate specificity to the SCF complex by interacting with SKP1.
- In Toxoplasma gondii, SKP1 undergoes oxygen-dependent hydroxylation and subsequent glycosylation, impacting its homodimerization and FBP binding.
Purpose of the Study:
- To investigate the atypical interaction of the glycosyltransferase GAT1 with SKP1 in Toxoplasma gondii.
- To elucidate the role of GAT1 in regulating SKP1's glycostate and its consequences on FBP binding and substrate recognition.
Main Methods:
- Sedimentation velocity analytical ultracentrifugation to determine GAT1-SKP1 complex stoichiometry and affinity.
- Computational modeling and mutational probing to analyze the binding interface between GAT1, FBPs, and SKP1.
- Analysis of FBP repertoire in GAT1-knockout cells compared to wild-type and other glycosylation mutants.
Main Results:
- GAT1 homodimers bind to SKP1 monomers with affinity and stoichiometry dependent on SKP1's glycostate.
- GAT1 competes with FBPs and SKP1 homodimerization at a shared hydrophobic interface, modulated by SKP1's intrinsically disordered C-terminal region (CTR).
- Substoichiometric GAT1 levels induce SKP1 monomerization in a CTR-dependent manner, influencing FBP binding preferences.
Conclusions:
- GAT1 acts as a regulator of SKP1's quaternary structure, promoting monomerization and altering FBP selection.
- The glycostate of SKP1, influenced by GAT1 and glycosylation, dynamically controls SCF complex composition and substrate targeting.
- This mechanism highlights a novel pathway for regulating E3 ligase activity and protein turnover in parasitic organisms.

