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Updated: Jun 23, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
APOE*4 risk-modifying genes and drug targets in Alzheimer's disease through cell-type-specific genomic analyses
Youjie Zeng1,2, Noah Cook1,2, Chenyu Yang1,2
1Department of Neurology, Washington University School of Medicine, St. Louis, Missouri, USA.
Introduction:
Genetics studies can identify drug targets that counteract the effects of the apolipoprotein E ε4 allele (APOE*4) on Alzheimer's disease (AD) but have remained limited in power and crucially did not assess genetic findings with regard to APOE*4's cell-type-specific impact on pathobiology.
Methods:
We conducted a novel APOE*4-stratified genome-wide association study (GWAS) of AD (N = 447,669) and integrated results with brain cell-type-specific multi-omics data to identify APOE*4 and cell-type-specific AD genes, followed by compound and drug repurposing.
Results:
In APOE*4 non-carriers (APOE*4-) and carriers (APOE*4+), we respectively identified 33 and 11 cell type-gene pairs with strong prioritization support. Oligodendrocytes displayed the largest proportion of APOE*4+ genes. Several genes were druggable and pinpointed APOE*4-stratified drugs or compounds.
Discussion:
We identified a set of APOE*4-stratified genes that may be causal for AD through brain cell-type-specific mechanisms. We additionally identified compounds that may shed light on therapeutic avenues for treating AD based on an individual's APOE*4 status.
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