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Updated: Jun 24, 2026

In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila
Published on: August 20, 2019
Allostery is a widespread cause of loss-of-function variant pathogenicity
Xiaotian Liao1,2, Ben Lehner3,4,5,6
1Wellcome Sanger Institute, Cambridge, UK.
Abstract:
Allosteric communication between non-contacting sites in proteins plays a fundamental role in biological regulation and drug action. While allosteric gain-of-function variants are known drivers of oncogene activation, the broader importance of allostery in genetic disease and protein evolution is less clear. Here, we introduce a comparative framework that disentangles functional disruption by mutations from protein destabilization. Applying this framework across diverse datasets-ranging from paired experimental measurements of abundance and activity to proteome-wide comparisons of evolutionary fitness and biophysical stability predictions-we provide evidence that allostery is a widespread cause of loss-of-function variant pathogenicity in human genetic diseases. In addition, our analyses reveal a conserved distance-dependent decay of allosteric mutational effects outside of protein active sites. As an important mechanism of pathogenicity, allostery needs to be better mapped, understood, and predicted across the human proteome.
Insights
Allosteric mutations, which affect protein function without direct contact, are a major cause of human genetic diseases. Understanding these effects is crucial for predicting disease and protein evolution.
Area of Science:
- Molecular Biology
- Genetics
- Biophysics
Background:
- Allosteric communication is vital for protein regulation and drug action.
- Gain-of-function allosteric variants drive oncogene activation, but their role in genetic disease and evolution is less understood.
Purpose of the Study:
- To develop a framework to distinguish functional disruption from destabilization caused by mutations.
- To investigate the role of allosteric effects in human genetic diseases and protein evolution.
Main Methods:
- Developed a comparative framework to analyze mutation effects.
- Applied the framework to diverse datasets including experimental measurements and proteome-wide evolutionary data.
- Utilized biophysical stability predictions.
Main Results:
- Allosteric mechanisms are a significant cause of loss-of-function variant pathogenicity in human genetic diseases.
- A conserved distance-dependent decay of allosteric mutational effects was observed outside active sites.
- Allosteric effects are widespread across the human proteome.
Conclusions:
- Allosteric effects are a critical, underappreciated mechanism in genetic disease.
- Mapping and predicting allosteric effects is essential for understanding protein function and disease.
- Further research into allosteric mechanisms can inform therapeutic strategies.
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