Methods to estimate marine functional connectivity: A primer

Organism movement is a key process in the transfer of individuals, genes, functional traits, matter, and energy among habitat patches, at sea and across the land-sea interface. The resulting fluxes, collectively termed marine functional connectivity (MFC), underpin planetary health and an array of ecosystem services. The ecological and economic impacts of rapid environmental change, including climate change, overexploitation, habitat loss and fragmentation, and the global transport of nonindigenous species make accurate estimation and prediction of MFC patterns paramount. However, estimating MFC is challenging given the relative inaccessibility of the oceans and the small size of many of the organisms and life stages with the highest dispersal potential. Here, we provide a methodological roadmap to help researchers and stakeholders understand, use, and integrate different tools to estimate organism movement and connectivity, focusing on (1) tagging and telemetry, (2) analysis of chemical markers in body tissues and structures, (3) genetics, and (4) numerical modeling. We describe method strengths and weaknesses, and the spatiotemporal resolution and scale of resulting connectivity estimates. Ancillary and emerging methods to estimate MFC are also reviewed. We then present case studies that have successfully applied or integrated different methods, particularly to support (1) marine protected area design, (2) global change predictions, focusing on climate change and bioinvasions, and (3) fisheries management. Finally, we highlight methodological innovations and concepts that promise to transform MFC research in the future.