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Updated: Jun 26, 2026

CRISPR Epigenome Editing in Human Cells using Plasmid DNA Transfection and mRNA Nucleofection Delivery
Published on: May 30, 2025
Light-controlled CRISPR-dCas9 epigenome editing: advanced drug-delivery strategies and oncology applications
Naiyereh Alipour Eskandani1, Danial Mirzaee2, Marzieh Ramezani Farani3
1School of Advanced Technologies in Medical, Islamic Azad University, Tehran Medical Sciences Branch, Tehran, Iran.
Abstract:
Cancer is increasingly recognized as a disease of the dysregulated epigenome; however, current epi-drugs are blunt, systemically toxic instruments. Catalytically dead CRISPR nucleases (dCas9) linked to chromatin effectors have now made it possible not only to write and erase epigenetic marks at specified loci without double-strand breaks but also to add an element of optogenetics, or reversible and light-encoded control over the timing and localization of the editors. In this review, the technological underpinnings of light-controlled CRISPR-dCas9 epigenome editing, which include architectures of dCas9 scaffold and guide, blue-to-near-infrared photoswitches, and high-gain epigenetic effector designs, are synthesized, and viral, non-viral, and stimuli-responsive delivery platforms, which have to be co-optimized with clinical light interfaces, are discussed. We then outline four functional routes by which opto-epigenome editors may be used therapeutically in cancer: tumor suppressor reactivation; oncogene and super-enhancer repression with metabolic rewiring; control of cancer stem cell differentiation; and immunomodulation of the tumor microenvironment. Lastly, a translational roadmap is defined in terms of preclinical model tiers, biomarker strategies, regulatory and manufacturing factors, and future directions, including NIR and bioluminescent actuation, implantable μLED devices, and AI-guided closed-loop illumination. Together, these aspects constitute design principles for advancing light-addressable epigenome editors toward first-in-human studies and for integrating them into combination regimens as a new class of precision cancer therapeutics.
Insights
Light-controlled CRISPR-dCas9 epigenome editing offers precise, reversible cancer therapy by targeting epigenetic marks. This technology enables new precision cancer treatments with potential for clinical application.
Area of Science:
- Genetics and Genomics
- Molecular Biology
- Cancer Research
Background:
- Cancer is increasingly understood as an epigenome-dysregulated disease.
- Current epigenetic drugs (epi-drugs) are systemic and toxic.
- CRISPR-based epigenome editing offers targeted epigenetic modification without DNA breaks.
Purpose of the Study:
- To review light-controlled CRISPR-dCas9 epigenome editing technologies.
- To discuss delivery platforms and therapeutic applications in cancer.
- To outline a translational roadmap for clinical development.
Main Methods:
- Synthesis of technological underpinnings: dCas9 (catalytically dead CRISPR nucleases) scaffold/guide architectures, photoswitches (blue-to-near-infrared), and effector designs.
- Discussion of delivery platforms: viral, non-viral, and stimuli-responsive systems.
- Exploration of opto-epigenome editor applications: tumor suppressor reactivation, oncogene repression, cancer stem cell differentiation, and immunomodulation.
Main Results:
- Optogenetics enables reversible, light-encoded control over epigenome editor timing and localization.
- Four therapeutic routes for opto-epigenome editors in cancer are outlined.
- A translational roadmap including preclinical models, biomarkers, and regulatory factors is defined.
Conclusions:
- Light-controlled CRISPR-dCas9 epigenome editing presents a novel class of precision cancer therapeutics.
- Advancements in delivery and actuation (e.g., NIR, bioluminescence, μLEDs) are crucial for clinical translation.
- Integration into combination regimens and AI-guided approaches will enhance therapeutic efficacy.
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