Related Experiment Video
Updated: Jun 26, 2026

Synthesizing Amino Acids Modified with Reactive Carbonyls in Silico to Assess Structural Effects Using Molecular Dynamics Simulations
Published on: April 26, 2024
GPU Accelerated Minimal Auxiliary Basis Approach TDDFT for Large Organic Molecules
Zehao Zhou1, Xiaojie Wu2, Yanheng Li3,4
1Zhongguancun Academy, Beijing 100094, China.
We developed a faster GPU-accelerated method for time-dependent density functional theory (TDDFT-risp) to calculate excited states in large molecules. This approach enables efficient computation for systems with thousands of atoms.
Area of Science:
- Computational Chemistry
- Quantum Chemistry
- Materials Science
Background:
- Accurate excited-state calculations are crucial for understanding molecular properties and reactions.
- Traditional methods struggle with large systems due to high computational cost.
- Developing efficient algorithms for large-scale quantum chemistry is an ongoing challenge.
Purpose of the Study:
- To introduce a GPU-accelerated implementation of time-dependent density functional theory with the minimal auxiliary basis approach (TDDFT-risp).
- To demonstrate the capability of TDDFT-risp for large molecular systems using the Tamm-Dancoff approximation (TDA-risp).
- To assess the accuracy and efficiency of the new method compared to existing approaches.
Main Methods:
- GPU-accelerated evaluation of three-center integrals and tensor contractions.
- Implementation of exchange-space truncation and omission of hydrogen atoms from the auxiliary basis.
- Utilizing a host memory-assisted Davidson solver for large eigenvalue problems.
- Employing the Tamm-Dancoff approximation (TDA-risp) for excited-state calculations.
Main Results:
- TDDFT-risp achieves excitation-energy errors of ~0.03-0.05 eV for low-lying states with a 40 eV exchange cutoff.
- Calculations for systems of 300-3000 atoms on a single A100 GPU range from minutes to hours.
- GPU TDA-risp shows 140-340× speedups over conventional methods for medium-sized systems.
Conclusions:
- GPU-TDDFT-risp offers a practical and efficient approach for excited-state calculations in large organic and biomolecular systems.
- The method significantly reduces computational time, enabling studies of previously intractable systems.
- This advancement opens new possibilities for computational chemistry research on complex molecular architectures.
More Related Videos
Related Concept Videos
¹³C NMR: Distortionless Enhancement by Polarization Transfer (DEPT)
Reaction Mechanisms: Rate-limiting Step Approximation
Crossed Aldol Reaction Using Weak Bases
Hybridization of Atomic Orbitals II
Predicting Molecular Geometry
Spectroscopy of Carboxylic Acid Derivatives
In the...

