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Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
Published on: December 28, 2017
Recent Outbreaks, Resistance Trends, and Control Measures in Candida auris and Candida glabrata Infections
Sepinoud Raeisi1, Priya Madhavan1,2, Diajeng Sekar Adisuri1
1School of Medicine, Faculty of Health and Medical Sciences, Taylor's University, 1 Jalan Taylors, Subang Jaya 47500, Malaysia.
Abstract:
The global rise in multidrug-resistant (MDR) fungal pathogens has positioned Candida auris and Candida glabrata as major threats to public health. In recent years, these pathogens have increasingly been reported beyond traditional hospital settings, including neonatal intensive care units, long-term care facilities, oncology wards, and post-pandemic critical care environments. International surveillance bodies, including the Centers for Disease Control and Prevention (CDC), European Centre for Disease Prevention and Control (ECDC), World Health Organization (WHO), and regional monitoring networks, have documented escalating antifungal resistance, complex outbreak dynamics, and persistent gaps in infection control implementation. C. auris has emerged as a major etiological agent of healthcare-associated outbreaks, particularly in intensive care and neonatal units. Surveillance data indicate that a high proportion of C. auris isolates exhibit resistance to azoles, often exceeding 80% in some regions, while echinocandin resistance remains variable. Resistance patterns have evolved from predominantly azole resistance to broader multidrug-resistant phenotypes, including treatment-emergent echinocandin resistance. Six genetically distinct clades (I-VI) have been identified, with Clades I, III, and IV associated with large-scale outbreaks, whereas available data suggests that Clades II, V, and VI are more geographically restricted, although evidence for the recently described clades remains limited. C. glabrata is increasingly recognized as a major cause of invasive candidiasis, with rising resistance reported across multiple regions. While reduced azole susceptibility was historically predominant, emerging evidence highlights rising dual azole-echinocandin resistance, adaptive microevolution during antifungal therapy, and biofilm-associated tolerance mechanisms. Despite these advances, significant gaps persist in global resistance surveillance and in the mechanistic understanding of virulence and antifungal adaptation. Current mitigation strategies include antifungal stewardship programs, expanded resistance testing, and strengthened surveillance systems. Advances in rapid diagnostic technologies such as matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry, polymerase chain reaction (PCR)-based assays, and genomic surveillance have improved pathogen identification and outbreak detection, although accessibility remains limited in resource-constrained settings. This review examines emerging epidemiological, genomic, and antifungal resistance trends in C. auris and C. glabrata and highlights key priorities for improving diagnosis, surveillance, stewardship, and management of multidrug-resistant Candida infections.
Insights
Multidrug-resistant Candida auris and Candida glabrata are growing public health threats, spreading globally with increasing antifungal resistance. Enhanced diagnostics and surveillance are crucial for managing these difficult-to-treat fungal infections.
Area of Science:
- Infectious Diseases
- Mycology
- Antimicrobial Resistance
Background:
- Global rise of multidrug-resistant (MDR) fungal pathogens, specifically Candida auris and Candida glabrata.
- Increasing incidence beyond traditional healthcare settings into neonatal intensive care units, long-term care facilities, and critical care environments.
- Escalating antifungal resistance, complex outbreak dynamics, and implementation gaps in infection control reported by international surveillance bodies.
Purpose of the Study:
- To review emerging epidemiological, genomic, and antifungal resistance trends for Candida auris and Candida glabrata.
- To highlight key priorities for improving diagnosis, surveillance, stewardship, and management of MDR Candida infections.
Main Methods:
- Analysis of surveillance data from international bodies (CDC, ECDC, WHO).
- Review of genomic studies identifying distinct clades of C. auris.
- Examination of advances in rapid diagnostic technologies (MALDI-TOF, PCR, genomic surveillance).
Main Results:
- Candida auris is a major cause of healthcare-associated outbreaks, with high azole resistance (>80% in some regions) and evolving echinocandin resistance.
- Six distinct clades of C. auris identified, with specific clades linked to large-scale outbreaks.
- Candida glabrata shows rising dual azole-echinocandin resistance and adaptive microevolution during antifungal therapy.
Conclusions:
- Significant gaps persist in global resistance surveillance and understanding of virulence/antifungal adaptation mechanisms.
- Antifungal stewardship, expanded resistance testing, and strengthened surveillance are critical mitigation strategies.
- Rapid diagnostics improve detection but face accessibility challenges in resource-limited settings.
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