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Updated: Jun 27, 2026

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies
Published on: September 1, 2023
Highly coarse-grained polarisable water models for mesoscopic simulations
Michael Andrew Seaton1, Benjamin Thomas Speake1, Ilian T Todorov1
1Scientific Computing, UKRI Science and Technology Facilities Council, STFC Daresbury Laboratory, Sci-Tech Daresbury, Keckwick Lane, Warrington WA4 4AD, United Kingdom.
Abstract:
Modelling micro- and mesoscopic scale thermodynamic and transport properties of soft condensed matter hinges upon its representation. This is especially relevant for polar solvents such as water, since these require effective representation of their dielectric nature as driven by molecular charge distributions and molecular network structuring. The dielectric nature of a medium leads to complex phenomena such as local polarisability response and restructuring near interfaces in reaction to changes in local charge distributions. Inclusion of such phenomena when using larger-than-atomistic techniques such as coarse-grained (CG) molecular dynamics and dissipative particle dynamics (DPD) is still an open question, to which we provide a novel way to consider and justify the necessary and suitable coarse-graining level, enabling us to compare new polar CG models' performance against that of an underlying atomistic model. We polarise our previous non-polarnDPD water model to prepare it for use in simulations of liquid electrolytes as well as solvated organic membranes and measure its fitness to serve as a dielectric medium by comparing its properties to those of the TIP3P water model, while simultaneously observing changes to properties already represented well by the non-polar model.
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